RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 Q6ZSN1 163 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 LITAFQ99732 161 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 F8P00451 2351 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 Q8N814 137 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 NTM-AS1Q6ZSK4 140 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 ODF3BA8MYP8 253 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 IBA57-AS1B1ANH7 110 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 COL27A1Q8IZC6 1860 aaPredicted RBP2.44□□□□□ -2.02
SYNE1-212ENST00000423061 Q6ZRU5 148 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 DEFB116Q30KQ4 102 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 K7ERS5 55 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 C1orf64Q8NEQ6 169 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 IGLV1-47P01700 117 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 SPAG11AQ6PDA7 123 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 ESM1Q9NQ30 184 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 A8MU10 97 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 C10orf142B7Z368 130 aa2.44□□□□□ -2.02
SYNE1-212ENST00000423061 NOTCH2NLQ7Z3S9 236 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 NOP10Q9NPE3 64 aaKnown RBP2.43□□□□□ -2.02
SYNE1-212ENST00000423061 SPATA3Q8NHX4 192 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 PSCAO43653 123 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 ATP11AUNQ6ZP68 121 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 IGHV4-59P01825 116 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 RNASE3P12724 160 aaKnown RBP2.43□□□□□ -2.02
SYNE1-212ENST00000423061 LINC01006Q8NI28 216 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 SPAG11BQ08648 103 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 CASC2Q6XLA1 102 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 CAMK2N2Q96S95 79 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00528Q8N1L1 170 aa2.43□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00313P59037 77 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 EPG5Q9HCE0 2579 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 C4orf3Q8WVX3 66 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 IGLV10-54A0A075B6I4 117 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 SYCNQ0VAF6 134 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 COX8CQ7Z4L0 72 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 COX7BP24311 80 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 DEFB136Q30KP8 78 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 Q8N9W7 124 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 DEFB112Q30KQ8 113 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 LINC01600Q96MT4 127 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 RNF223E7ERA6 249 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 hDV103S1A0JD37 113 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 ZNF575Q86XF7 245 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00208Q96KT6 92 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 SLURP1P55000 103 aa2.42□□□□□ -2.02
SYNE1-212ENST00000423061 LIMD2Q9BT23 127 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 C22orf24Q9Y442 160 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 FSHBP01225 129 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 Q1T7F1 81 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 IGHV4-30-4P0DP06 118 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 IGHV4-31P0DP07 118 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 B9D2Q9BPU9 175 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 EPM2AB3EWF7 344 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 WFDC10BQ8IUB3 73 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 A0A096LPF7 62 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00315P59091 139 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 NDUFB1O75438 58 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 LINC00242Q5T6M2 205 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 TRBV6-8A0A0A6YYG3 113 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 WFDC10AQ9H1F0 79 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 Q6ZQY7 126 aa2.41□□□□□ -2.02
SYNE1-212ENST00000423061 RETNLBQ9BQ08 111 aa2.4□□□□□ -2.02
SYNE1-212ENST00000423061 TRBV10-3A0A0K0K1G6 114 aa2.4□□□□□ -2.02
SYNE1-212ENST00000423061 KLKP1Q107X0 134 aa2.4□□□□□ -2.02
SYNE1-212ENST00000423061 IGHV4-38-2P0DP08 117 aa2.4□□□□□ -2.02
SYNE1-212ENST00000423061 PRR26Q8N8Z3 221 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 C16orf90A8MZG2 172 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 Q6ZTC4 211 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 KLLNB2CW77 178 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 C9orf116Q5BN46 136 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-212ENST00000423061 C6orf99Q4VX62 202 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 C10orf25Q5T742 122 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 Q6ZRP5 223 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 WFDC13Q8IUB5 93 aa2.4□□□□□ -2.03
SYNE1-212ENST00000423061 IGHV3OR16-9A0A0B4J2B5 98 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 IGKV2D-24A0A075B6R9 120 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 PLA2G2CQ5R387 149 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 C3orf84H3BNL1 204 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 OBSCN-AS1Q96MR7 158 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 IGLV5-39A0A0G2JS06 123 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 MRGPRG-AS1Q2M3A8 158 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 KIF25-AS1Q9Y6Z4 181 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 MAST4O15021 2626 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 XAGE1AQ9HD64 81 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 MUC7Q8TAX7 377 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 CHCHD7Q9BUK0 85 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 FLNAP21333 2647 aaKnown RBP2.39□□□□□ -2.03
SYNE1-212ENST00000423061 PHF5AQ7RTV0 110 aaKnown RBP2.39□□□□□ -2.03
SYNE1-212ENST00000423061 MOBPQ13875 183 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 KLK12Q9UKR0 248 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 IGKV2-28A0A075B6P5 120 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 IGKV2D-28P01615 120 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 MAP6D1Q9H9H5 199 aa2.39□□□□□ -2.03
SYNE1-212ENST00000423061 M0R2N4 97 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 USP24Q9UPU5 2620 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 TRBV6-4A0A1B0GX49 114 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 ASB16-AS1Q495Z4 193 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 Q6ZQT0 140 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 SMIM1B2RUZ4 78 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 LOC110117498A0A087WWA1 95 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms