RNA–Protein interactions for RNA: ENST00000412393.5

LINC00342-201, long intergenic non-protein coding RNA 342, humanhuman

TSL 3 BASIC

Gene LINC00342, Length 654 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-201ENST00000412393 LINC00315P59091 139 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 SRSF9Q13242 221 aaKnown RBP eCLIP3.72□□□□□ -1.81
LINC00342-201ENST00000412393 ZNF876PQ49A33 203 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 FAM159AQ6UWV7 190 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 C2orf66Q6UXQ4 117 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 C1orf158Q8N1D5 194 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 RNF182Q8N6D2 247 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 ANKRD29Q8N6D5 301 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 TMEM263Q8WUH6 116 aaKnown RBP3.72□□□□□ -1.81
LINC00342-201ENST00000412393 DPH3P1Q9H4G8 78 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 NACAE9PAV3 2078 aa3.72□□□□□ -1.81
LINC00342-201ENST00000412393 LOC107984156A0A0G2JMH3 177 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 A0A0J9YXY3 114 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 TRBV10-2A0A0K0K1G8 114 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 UQCRQO14949 82 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 TSHBP01222 138 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 INSP01308 110 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 ATXN8Q156A1 80 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 SPINK13Q1W4C9 94 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 FAM222AQ5U5X8 452 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 ARL17AQ8IVW1 177 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 TMEM101Q96IK0 257 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 ODF3Q96PU9 254 aa3.71□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV21A0A0B4J279 112 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 C9JAW5 83 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 PRAC2D3DTV9 90 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 F5H768 121 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 J3QQQ9 107 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 M0R2P5 195 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 LEPROTO15243 131 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 TIMM17BO60830 172 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 HTN3P15516 51 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 DAD1P61803 113 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 RHOHQ15669 191 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 LINC01620Q4KN68 170 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 SPANXN1Q5VSR9 72 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 SCGB1D4Q6XE38 83 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 ZFAND2AQ8N6M9 145 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 PLEKHB2Q96CS7 222 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 PYGO1Q9Y3Y4 419 aa3.7□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV12-2A0A075B6T6 113 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 A0A087WWL8 130 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV4A0A0B4J268 109 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 TMEM223A0PJW6 202 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 PRB4P10163 310 aaPredicted RBP3.69□□□□□ -1.82
LINC00342-201ENST00000412393 RNASE4P34096 147 aaKnown RBP3.69□□□□□ -1.82
LINC00342-201ENST00000412393 TMEM258P61165 79 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 TMEM170BQ5T4T1 132 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 C9orf153Q5TBE3 101 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 Q8TAT8 98 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 LINC01587Q99440 93 aa3.69□□□□□ -1.82
LINC00342-201ENST00000412393 FRAS1Q86XX4 4008 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV8-4A0A0B4J246 113 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 LYRM9A8MSI8 78 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 PRM2P04554 102 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 ZNF22P17026 224 aaPredicted RBP3.68□□□□□ -1.82
LINC00342-201ENST00000412393 CXCL5P42830 114 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 PIK3CD-AS1Q5SR53 167 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 FAM19A5Q7Z5A7 132 aaPredicted RBP3.68□□□□□ -1.82
LINC00342-201ENST00000412393 UBE2DNLQ8IWF7 75 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 C3orf22Q8N5N4 141 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 LINC00526Q96FQ7 95 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 KIR2DL4Q99706 377 aa3.68□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV26-2A0A0B4J265 109 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 PLAC8L1A1L4L8 177 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 KLLNB2CW77 178 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 COX6CP09669 75 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 DEFB130BP0DP73 79 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 DEFB130AP0DP74 79 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 RNASE3P12724 160 aaKnown RBP3.67□□□□□ -1.82
LINC00342-201ENST00000412393 HTN1P15515 57 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 C15orf53Q8NAA6 179 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 C16orf74Q96GX8 76 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 LITAFQ99732 161 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 DNAH17Q9UFH2 4485 aa3.67□□□□□ -1.82
LINC00342-201ENST00000412393 MUC4Q99102 2169 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 TRAV12-3A0A0B4J271 114 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 H7C423 109 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 M0R2N4 97 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 LST1O00453 97 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 CRYGAP11844 174 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 LGALS3P17931 250 aaKnown RBP3.66□□□□□ -1.82
LINC00342-201ENST00000412393 TSPEAR-AS2P59090 65 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 HERVK_113P63121 156 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 MRPS36P82909 103 aaKnown RBP3.66□□□□□ -1.82
LINC00342-201ENST00000412393 RPL36AP83881 106 aaKnown RBP3.66□□□□□ -1.82
LINC00342-201ENST00000412393 LINC00336Q6ZUF6 198 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 C5orf38Q86SI9 138 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 LINC00643Q86TS7 51 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 MUSTN1Q8IVN3 82 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 UBE2WQ96B02 151 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 NOP10Q9NPE3 64 aaKnown RBP3.66□□□□□ -1.82
LINC00342-201ENST00000412393 PRO0628Q9UI54 55 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 PHLDA3Q9Y5J5 127 aa3.66□□□□□ -1.82
LINC00342-201ENST00000412393 H3BVH4 76 aa3.65□□□□□ -1.83
LINC00342-201ENST00000412393 M0QY20 66 aa3.65□□□□□ -1.83
LINC00342-201ENST00000412393 ATOX1O00244 68 aa3.65□□□□□ -1.83
LINC00342-201ENST00000412393 LINC00694P0DN24 101 aa3.65□□□□□ -1.83
LINC00342-201ENST00000412393 FAM19A3Q7Z5A8 133 aa3.65□□□□□ -1.83
LINC00342-201ENST00000412393 C14orf178Q8N769 122 aaPredicted RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms