RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 A0A1B0GU69 56 aa7.4□□□□□ -1.22
LIMCH1-203ENST00000396595 LINC01547P58512 204 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-203ENST00000396595 Q8N814 137 aa7.4□□□□□ -1.23
LIMCH1-203ENST00000396595 AMELXQ99217 191 aa7.4□□□□□ -1.23
LIMCH1-203ENST00000396595 RETNLBQ9BQ08 111 aa7.4□□□□□ -1.23
LIMCH1-203ENST00000396595 HCG22E2RYF7 251 aa7.39□□□□□ -1.23
LIMCH1-203ENST00000396595 ODF3L2Q3SX64 289 aa7.39□□□□□ -1.23
LIMCH1-203ENST00000396595 EGFEM1PQ0D2K5 195 aa7.39□□□□□ -1.23
LIMCH1-203ENST00000396595 EDN2P20800 178 aa7.39□□□□□ -1.23
LIMCH1-203ENST00000396595 C7orf33Q8WU49 177 aa7.39□□□□□ -1.23
LIMCH1-203ENST00000396595 IGLV2-18A0A075B6J9 118 aa7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 GOLGB1Q14789 3259 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 BRI3O95415 125 aa7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 UNQ6190/PRO20217Q6UXQ8 127 aa7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 RPL37AP8A6NKH3 93 aa7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 PRO3102Q9H379 93 aa7.38□□□□□ -1.23
LIMCH1-203ENST00000396595 SPINK1P00995 79 aa7.37□□□□□ -1.23
LIMCH1-203ENST00000396595 PRRC2AP48634 2157 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-203ENST00000396595 ADAMTSL4-AS1Q5T5F5 129 aa7.37□□□□□ -1.23
LIMCH1-203ENST00000396595 C10orf25Q5T742 122 aa7.37□□□□□ -1.23
LIMCH1-203ENST00000396595 A0A087WYN8 130 aa7.36□□□□□ -1.23
LIMCH1-203ENST00000396595 COX6A2Q02221 97 aa7.36□□□□□ -1.23
LIMCH1-203ENST00000396595 ZNF843Q8N446 348 aa7.36□□□□□ -1.23
LIMCH1-203ENST00000396595 CEP192Q8TEP8 1941 aa7.36□□□□□ -1.23
LIMCH1-203ENST00000396595 PIEZO2Q9H5I5 2752 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 X6R8D5 127 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 LINC00846Q9NV44 126 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 ZNF580Q9UK33 172 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 PIEZO1Q92508 2521 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 Q9UF83 564 aa7.35□□□□□ -1.23
LIMCH1-203ENST00000396595 BCE1O60756 84 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 AVPP01185 164 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 C1orf137Q5JT78 98 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 LINC00474Q9P2X8 69 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 IGLV4-60A0A075B6I1 120 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 ATP11AUNQ6ZP68 121 aa7.34□□□□□ -1.23
LIMCH1-203ENST00000396595 LY6G6DO95868 133 aa7.34□□□□□ -1.24
LIMCH1-203ENST00000396595 IGF2RP11717 2491 aa7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 NCOR2Q9Y618 2525 aa7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 LRP4O75096 1905 aa7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 TLN1Q9Y490 2541 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 C9orf116Q5BN46 136 aaPredicted RBP7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 C1orf64Q8NEQ6 169 aa7.33□□□□□ -1.24
LIMCH1-203ENST00000396595 LINC00575Q6W349 94 aa7.32□□□□□ -1.24
LIMCH1-203ENST00000396595 IGLV1-51P01701 117 aa7.32□□□□□ -1.24
LIMCH1-203ENST00000396595 LINC01561Q8N1V8 128 aa7.32□□□□□ -1.24
LIMCH1-203ENST00000396595 CDSNQ15517 529 aa7.32□□□□□ -1.24
LIMCH1-203ENST00000396595 FHL2Q14192 279 aa7.32□□□□□ -1.24
LIMCH1-203ENST00000396595 IGLV9-49A0A0B4J1Y8 123 aa7.31□□□□□ -1.24
LIMCH1-203ENST00000396595 IGHV6-1A0A0B4J1U7 121 aa7.31□□□□□ -1.24
LIMCH1-203ENST00000396595 PRR3P79522 188 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-203ENST00000396595 LCA10Q71F78 164 aa7.3□□□□□ -1.24
LIMCH1-203ENST00000396595 KTN1-AS1Q86SY8 53 aa7.3□□□□□ -1.24
LIMCH1-203ENST00000396595 PLA2G1BP04054 148 aaKnown RBP7.3□□□□□ -1.24
LIMCH1-203ENST00000396595 A0A1B0GUV1 79 aa7.3□□□□□ -1.24
LIMCH1-203ENST00000396595 C7orf65Q6ZTY9 151 aa7.29□□□□□ -1.24
LIMCH1-203ENST00000396595 FAM19A4Q96LR4 140 aa7.29□□□□□ -1.24
LIMCH1-203ENST00000396595 REG3GQ6UW15 175 aa7.28□□□□□ -1.24
LIMCH1-203ENST00000396595 SMIM29Q86T20 159 aa7.28□□□□□ -1.24
LIMCH1-203ENST00000396595 PTPRSQ13332 1948 aa7.28□□□□□ -1.24
LIMCH1-203ENST00000396595 SSBP3-AS1Q7Z2R9 100 aa7.28□□□□□ -1.24
LIMCH1-203ENST00000396595 PRLHP81277 87 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 Q6ZSN1 163 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 SBSPONQ8IVN8 264 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 C6orf223Q8N319 242 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 KIF25-AS1Q9Y6Z4 181 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 LINC01546A6NGU7 62 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 CYP4F30PQ9H0H9 118 aa7.27□□□□□ -1.25
LIMCH1-203ENST00000396595 ACYP2P14621 99 aa7.26□□□□□ -1.25
LIMCH1-203ENST00000396595 C2orf48Q96LS8 159 aa7.26□□□□□ -1.25
LIMCH1-203ENST00000396595 M0R2N4 97 aa7.26□□□□□ -1.25
LIMCH1-203ENST00000396595 LINC00337Q8N6G1 96 aa7.25□□□□□ -1.25
LIMCH1-203ENST00000396595 UTRNP46939 3433 aa7.25□□□□□ -1.25
LIMCH1-203ENST00000396595 CPAMD8Q8IZJ3 1885 aa7.25□□□□□ -1.25
LIMCH1-203ENST00000396595 AGRNO00468 2067 aa7.24□□□□□ -1.25
LIMCH1-203ENST00000396595 IGLV5-39A0A0G2JS06 123 aa7.24□□□□□ -1.25
LIMCH1-203ENST00000396595 Q6ZTC4 211 aa7.24□□□□□ -1.25
LIMCH1-203ENST00000396595 LINC00336Q6ZUF6 198 aa7.24□□□□□ -1.25
LIMCH1-203ENST00000396595 DEFB116Q30KQ4 102 aa7.24□□□□□ -1.25
LIMCH1-203ENST00000396595 H3BS24 57 aa7.23□□□□□ -1.25
LIMCH1-203ENST00000396595 USP9XQ93008 2570 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-203ENST00000396595 A0A087WSZ3 146 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 A0A1W2PPR1 153 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 A8MUN3 132 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 C16orf95Q9H693 158 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 Q9BRP9 147 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 RAI1Q7Z5J4 1906 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 TLN2Q9Y4G6 2542 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 ABCA12Q86UK0 2595 aa7.22□□□□□ -1.25
LIMCH1-203ENST00000396595 COL5A1P20908 1838 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-203ENST00000396595 JMJD1CQ15652 2540 aa7.21□□□□□ -1.26
LIMCH1-203ENST00000396595 C6orf48Q9UBA6 75 aa7.2□□□□□ -1.26
LIMCH1-203ENST00000396595 H3BPC8 53 aa7.2□□□□□ -1.26
LIMCH1-203ENST00000396595 FSHBP01225 129 aa7.2□□□□□ -1.26
LIMCH1-203ENST00000396595 EXPH5Q8NEV8 1989 aa7.2□□□□□ -1.26
LIMCH1-203ENST00000396595 LINC00315P59091 139 aa7.2□□□□□ -1.26
LIMCH1-203ENST00000396595 ADAMTS20P59510 1910 aa7.19□□□□□ -1.26
LIMCH1-203ENST00000396595 FN1P02751 2386 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-203ENST00000396595 SMCPP49901 116 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-203ENST00000396595 LYPD5Q6UWN5 251 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms