RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CMC4P56277 68 aaPredicted RBP14.72□□□□□ -0.05
UPF3A-202ENST00000375299 WFDC10AQ9H1F0 79 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 TLN2Q9Y4G6 2542 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 C2CD3Q4AC94 2353 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 EPG5Q9HCE0 2579 aa14.71□□□□□ -0.05
UPF3A-202ENST00000375299 WNK1Q9H4A3 2382 aa14.71□□□□□ -0.06
UPF3A-202ENST00000375299 DNAJC9-AS1A6NH13 148 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 PLA2G2AP14555 144 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 LINC01561Q8N1V8 128 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 SERP2Q8N6R1 65 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 NOTCH3Q9UM47 2321 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 LINC00167Q96N53 147 aa14.7□□□□□ -0.06
UPF3A-202ENST00000375299 CCKP06307 115 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 CYSTM1Q9H1C7 97 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 CSNK1G2-AS1Q8NCQ2 148 aa14.69□□□□□ -0.06
UPF3A-202ENST00000375299 ITPR3Q14573 2671 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 USP17L23D6RBM5 183 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 NF1P21359 2839 aa14.68□□□□□ -0.06
UPF3A-202ENST00000375299 Q8IZM0 81 aa14.67□□□□□ -0.06
UPF3A-202ENST00000375299 WFDC11Q8NEX6 87 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 UPK3BQ9BT76 320 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 XCL1P47992 114 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 ESM1Q9NQ30 184 aa14.66□□□□□ -0.06
UPF3A-202ENST00000375299 JMJD7-PLA2G4BH0Y9G9 81 aa14.65□□□□□ -0.06
UPF3A-202ENST00000375299 C19orf73Q9NVV2 129 aa14.65□□□□□ -0.06
UPF3A-202ENST00000375299 SONP18583 2426 aaKnown RBP14.65□□□□□ -0.06
UPF3A-202ENST00000375299 NANOS2P60321 138 aaKnown RBP14.65□□□□□ -0.07
UPF3A-202ENST00000375299 RPS28P62857 69 aaKnown RBP14.65□□□□□ -0.07
UPF3A-202ENST00000375299 S100A7L2Q5SY68 101 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 Q8N814 137 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 TMEM258P61165 79 aa14.63□□□□□ -0.07
UPF3A-202ENST00000375299 NBPF19A0A087WUL8 3843 aa14.61□□□□□ -0.07
UPF3A-202ENST00000375299 FAM19A5Q7Z5A7 132 aaPredicted RBP14.61□□□□□ -0.07
UPF3A-202ENST00000375299 TMEM256-PLSCR3K7ERE1 68 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 A0A1B0GUV1 79 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 IGLV1-51P01701 117 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 PRR3P79522 188 aaKnown RBP14.6□□□□□ -0.07
UPF3A-202ENST00000375299 ATP5EP2Q5VTU8 51 aa14.6□□□□□ -0.07
UPF3A-202ENST00000375299 NDUFC2O95298 119 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 NIPBLQ6KC79 2804 aaeCLIP14.59□□□□□ -0.07
UPF3A-202ENST00000375299 CUBNO60494 3623 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 CLPSL2Q6UWE3 100 aa14.59□□□□□ -0.07
UPF3A-202ENST00000375299 DEFB130BP0DP73 79 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 DEFB130AP0DP74 79 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 GYPEP15421 78 aa14.58□□□□□ -0.08
UPF3A-202ENST00000375299 FLNAP21333 2647 aaKnown RBP14.57□□□□□ -0.08
UPF3A-202ENST00000375299 HILS1P60008 231 aa14.56□□□□□ -0.08
UPF3A-202ENST00000375299 KIR2DL5BQ8NHK3 375 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 SETXQ7Z333 2677 aaKnown RBP14.55□□□□□ -0.08
UPF3A-202ENST00000375299 LINC01006Q8NI28 216 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 DPH3Q96FX2 82 aa14.55□□□□□ -0.08
UPF3A-202ENST00000375299 COX17Q14061 63 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 LYPD5Q6UWN5 251 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 KIAA0087Q14695 138 aa14.54□□□□□ -0.08
UPF3A-202ENST00000375299 LINC00612Q8N6U2 182 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 WFDC9Q8NEX5 89 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 CCDC168Q8NDH2 2452 aa14.53□□□□□ -0.08
UPF3A-202ENST00000375299 SMIM9A6NGZ8 99 aa14.52□□□□□ -0.08
UPF3A-202ENST00000375299 GHRHP01286 108 aa14.52□□□□□ -0.08
UPF3A-202ENST00000375299 JMJD1CQ15652 2540 aa14.52□□□□□ -0.09
UPF3A-202ENST00000375299 KRTAP1-1Q07627 177 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 ENHOQ6UWT2 76 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 C16orf95Q9H693 158 aa14.51□□□□□ -0.09
UPF3A-202ENST00000375299 C6orf99Q4VX62 202 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 FAM19A1Q7Z5A9 133 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 UBL5Q9BZL1 73 aa14.5□□□□□ -0.09
UPF3A-202ENST00000375299 SETD2Q9BYW2 2564 aaPredicted RBP14.49□□□□□ -0.09
UPF3A-202ENST00000375299 TRAV23DV6A0A075B6W5 121 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 TRBV10-3A0A0K0K1G6 114 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 CD164L2Q6UWJ8 174 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 RNASE1P07998 156 aaKnown RBP14.49□□□□□ -0.09
UPF3A-202ENST00000375299 C5orf47Q569G3 176 aa14.49□□□□□ -0.09
UPF3A-202ENST00000375299 A0A096LPF7 62 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 IGHV4-28A0A0C4DH34 117 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 DSCR8Q96T75 97 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 TENM4Q6N022 2769 aa14.48□□□□□ -0.09
UPF3A-202ENST00000375299 LINC00269Q8N2A0 174 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 PRO0255Q9UI72 69 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 C9orf116Q5BN46 136 aaPredicted RBP14.47□□□□□ -0.09
UPF3A-202ENST00000375299 Q8NDZ9 215 aa14.47□□□□□ -0.09
UPF3A-202ENST00000375299 LINC00575Q6W349 94 aa14.46□□□□□ -0.09
UPF3A-202ENST00000375299 CHCHD10Q8WYQ3 142 aaPredicted RBP14.46□□□□□ -0.09
UPF3A-202ENST00000375299 ANK3Q12955 4377 aaKnown RBP14.46□□□□□ -0.1
UPF3A-202ENST00000375299 PDZD2O15018 2839 aa14.46□□□□□ -0.1
UPF3A-202ENST00000375299 OXTP01178 125 aa14.45□□□□□ -0.1
UPF3A-202ENST00000375299 Q6ZQT0 140 aa14.44□□□□□ -0.1
UPF3A-202ENST00000375299 IGLV10-54A0A075B6I4 117 aa14.43□□□□□ -0.1
UPF3A-202ENST00000375299 RBM3P98179 157 aaKnown RBP14.42□□□□□ -0.1
UPF3A-202ENST00000375299 ZNF561-AS1K7EIQ3 104 aa14.42□□□□□ -0.1
UPF3A-202ENST00000375299 NDUFC2-KCTD14E9PQ53 114 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 LOC110117498A0A087WWA1 95 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 REG3AQ06141 175 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 X6R8D5 127 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 ACANP16112 2415 aa14.41□□□□□ -0.1
UPF3A-202ENST00000375299 ANGP03950 147 aaKnown RBP14.4□□□□□ -0.1
UPF3A-202ENST00000375299 C6orf223Q8N319 242 aa14.4□□□□□ -0.1
UPF3A-202ENST00000375299 KMT2BQ9UMN6 2715 aaPredicted RBP14.4□□□□□ -0.1
UPF3A-202ENST00000375299 Q8N3U1 123 aa14.39□□□□□ -0.11
UPF3A-202ENST00000375299 LAMTOR3Q9UHA4 124 aa14.38□□□□□ -0.11
UPF3A-202ENST00000375299 MTORP42345 2549 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms