RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TSPEAR-AS2P59090 65 aa8.25□□□□□ -1.09
PTPRF-203ENST00000372407 SNURFQ9Y675 71 aa8.25□□□□□ -1.09
PTPRF-203ENST00000372407 UNQ6190/PRO20217Q6UXQ8 127 aa8.24□□□□□ -1.09
PTPRF-203ENST00000372407 CSDC2Q9Y534 153 aaKnown RBP8.24□□□□□ -1.09
PTPRF-203ENST00000372407 WFDC13Q8IUB5 93 aa8.24□□□□□ -1.09
PTPRF-203ENST00000372407 CHCHD7Q9BUK0 85 aa8.24□□□□□ -1.09
PTPRF-203ENST00000372407 AMELXQ99217 191 aa8.24□□□□□ -1.09
PTPRF-203ENST00000372407 PPDPFQ9H3Y8 114 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 V9GYY9 64 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 IGLV2-18A0A075B6J9 118 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 LRCOL1A6NCL2 159 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 HECTD1Q9ULT8 2610 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 ACANP16112 2415 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 EGFEM1PQ0D2K5 195 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 SMR3AQ99954 134 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 ADAMTS20P59510 1910 aa8.23□□□□□ -1.09
PTPRF-203ENST00000372407 LOC107984640A0A0U1RRK4 108 aa8.22□□□□□ -1.09
PTPRF-203ENST00000372407 ZNF580Q9UK33 172 aa8.22□□□□□ -1.09
PTPRF-203ENST00000372407 IGLV1-51P01701 117 aa8.22□□□□□ -1.09
PTPRF-203ENST00000372407 LINC00694P0DN24 101 aa8.21□□□□□ -1.09
PTPRF-203ENST00000372407 RPL37AP8A6NKH3 93 aa8.21□□□□□ -1.1
PTPRF-203ENST00000372407 ADAMTSL4-AS1Q5T5F5 129 aa8.21□□□□□ -1.1
PTPRF-203ENST00000372407 IGLV4-60A0A075B6I1 120 aa8.21□□□□□ -1.1
PTPRF-203ENST00000372407 IGHV4-30-4P0DP06 118 aa8.2□□□□□ -1.1
PTPRF-203ENST00000372407 COX6A2Q02221 97 aa8.2□□□□□ -1.1
PTPRF-203ENST00000372407 BEAN1Q3B7T3 259 aa8.2□□□□□ -1.1
PTPRF-203ENST00000372407 Q8N814 137 aa8.2□□□□□ -1.1
PTPRF-203ENST00000372407 SPINK6Q6UWN8 80 aa8.2□□□□□ -1.1
PTPRF-203ENST00000372407 C7orf33Q8WU49 177 aa8.19□□□□□ -1.1
PTPRF-203ENST00000372407 PRR4Q16378 134 aa8.19□□□□□ -1.1
PTPRF-203ENST00000372407 A0A0U1RQV1 116 aa8.19□□□□□ -1.1
PTPRF-203ENST00000372407 Q8N9L7 120 aa8.19□□□□□ -1.1
PTPRF-203ENST00000372407 ZNF292O60281 2723 aa8.19□□□□□ -1.1
PTPRF-203ENST00000372407 LAMA2P24043 3122 aaKnown RBP8.18□□□□□ -1.1
PTPRF-203ENST00000372407 TRBV10-3A0A0K0K1G6 114 aa8.18□□□□□ -1.1
PTPRF-203ENST00000372407 C9orf116Q5BN46 136 aaPredicted RBP8.18□□□□□ -1.1
PTPRF-203ENST00000372407 ZNF706Q9Y5V0 76 aaPredicted RBP8.18□□□□□ -1.1
PTPRF-203ENST00000372407 TRAV7A0A075B6U4 112 aa8.18□□□□□ -1.1
PTPRF-203ENST00000372407 OXLD1Q5BKU9 147 aa8.18□□□□□ -1.1
PTPRF-203ENST00000372407 FHL2Q14192 279 aa8.17□□□□□ -1.1
PTPRF-203ENST00000372407 MRPL55Q7Z7F7 128 aaKnown RBP8.17□□□□□ -1.1
PTPRF-203ENST00000372407 A0A0J9YWU9 116 aa8.17□□□□□ -1.1
PTPRF-203ENST00000372407 SMIM26A0A096LP01 95 aa8.16□□□□□ -1.1
PTPRF-203ENST00000372407 NANOS2P60321 138 aaKnown RBP8.16□□□□□ -1.1
PTPRF-203ENST00000372407 EXPH5Q8NEV8 1989 aa8.16□□□□□ -1.1
PTPRF-203ENST00000372407 A0A087WVE0 104 aa8.16□□□□□ -1.1
PTPRF-203ENST00000372407 PRR3P79522 188 aaKnown RBP8.16□□□□□ -1.1
PTPRF-203ENST00000372407 C1orf137Q5JT78 98 aa8.15□□□□□ -1.1
PTPRF-203ENST00000372407 CELA1Q9UNI1 258 aa8.15□□□□□ -1.1
PTPRF-203ENST00000372407 CPAMD8Q8IZJ3 1885 aa8.15□□□□□ -1.11
PTPRF-203ENST00000372407 A0A087WYN8 130 aa8.15□□□□□ -1.11
PTPRF-203ENST00000372407 ANKRD17O75179 2603 aaKnown RBP8.15□□□□□ -1.11
PTPRF-203ENST00000372407 A0A1B0GUV1 79 aa8.14□□□□□ -1.11
PTPRF-203ENST00000372407 K7ERS5 55 aa8.14□□□□□ -1.11
PTPRF-203ENST00000372407 LINC00474Q9P2X8 69 aa8.14□□□□□ -1.11
PTPRF-203ENST00000372407 KIF25-AS1Q9Y6Z4 181 aa8.14□□□□□ -1.11
PTPRF-203ENST00000372407 Q6ZSN1 163 aa8.14□□□□□ -1.11
PTPRF-203ENST00000372407 PRRC2CQ9Y520 2896 aaKnown RBP8.14□□□□□ -1.11
PTPRF-203ENST00000372407 PLAC8L1A1L4L8 177 aa8.13□□□□□ -1.11
PTPRF-203ENST00000372407 A6NED7 52 aa8.13□□□□□ -1.11
PTPRF-203ENST00000372407 PRR15LQ9BU68 103 aa8.13□□□□□ -1.11
PTPRF-203ENST00000372407 M0R2N4 97 aa8.12□□□□□ -1.11
PTPRF-203ENST00000372407 Q8N3U1 123 aa8.12□□□□□ -1.11
PTPRF-203ENST00000372407 FAM30AQ9NZY2 134 aa8.12□□□□□ -1.11
PTPRF-203ENST00000372407 TET2Q6N021 2002 aaPredicted RBP8.12□□□□□ -1.11
PTPRF-203ENST00000372407 TNRC18O15417 2968 aaPredicted RBP8.11□□□□□ -1.11
PTPRF-203ENST00000372407 IGLV9-49A0A0B4J1Y8 123 aa8.11□□□□□ -1.11
PTPRF-203ENST00000372407 M0QXV9 152 aa8.11□□□□□ -1.11
PTPRF-203ENST00000372407 HRCT1Q6UXD1 115 aa8.11□□□□□ -1.11
PTPRF-203ENST00000372407 C6orf223Q8N319 242 aa8.11□□□□□ -1.11
PTPRF-203ENST00000372407 RAI1Q7Z5J4 1906 aaPredicted RBP8.11□□□□□ -1.11
PTPRF-203ENST00000372407 LINC00208Q96KT6 92 aa8.1□□□□□ -1.11
PTPRF-203ENST00000372407 C10orf25Q5T742 122 aa8.09□□□□□ -1.11
PTPRF-203ENST00000372407 Q6ZTC4 211 aa8.09□□□□□ -1.11
PTPRF-203ENST00000372407 HELZ2Q9BYK8 2649 aaKnown RBP8.09□□□□□ -1.11
PTPRF-203ENST00000372407 SERP1Q9Y6X1 66 aa8.09□□□□□ -1.11
PTPRF-203ENST00000372407 LINC01561Q8N1V8 128 aa8.09□□□□□ -1.11
PTPRF-203ENST00000372407 LINC00337Q8N6G1 96 aa8.08□□□□□ -1.12
PTPRF-203ENST00000372407 C16orf95Q9H693 158 aa8.08□□□□□ -1.12
PTPRF-203ENST00000372407 RETNQ9HD89 108 aa8.08□□□□□ -1.12
PTPRF-203ENST00000372407 LINC00846Q9NV44 126 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 C2orf48Q96LS8 159 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 USP24Q9UPU5 2620 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 LINC00575Q6W349 94 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 IGLV5-39A0A0G2JS06 123 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 REG3GQ6UW15 175 aa8.07□□□□□ -1.12
PTPRF-203ENST00000372407 F8WDY8 70 aa8.06□□□□□ -1.12
PTPRF-203ENST00000372407 LINC00315P59091 139 aa8.06□□□□□ -1.12
PTPRF-203ENST00000372407 CDH23Q9H251 3354 aa8.06□□□□□ -1.12
PTPRF-203ENST00000372407 LINC01546A6NGU7 62 aa8.06□□□□□ -1.12
PTPRF-203ENST00000372407 PCSK5Q92824 1860 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 LINC01547P58512 204 aaPredicted RBP8.05□□□□□ -1.12
PTPRF-203ENST00000372407 Q6ZVQ6 151 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 CDIP1Q9H305 208 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 IGHV3OR16-9A0A0B4J2B5 98 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 PRYO14603 147 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 C11orf72Q8NBR9 251 aa8.05□□□□□ -1.12
PTPRF-203ENST00000372407 UNC80Q8N2C7 3258 aa8.04□□□□□ -1.12
PTPRF-203ENST00000372407 SOSTDC1Q6X4U4 206 aa8.04□□□□□ -1.12
PTPRF-203ENST00000372407 SZT2Q5T011 3432 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms