RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 LINC01547P58512 204 aaPredicted RBP11.29□□□□□ -0.6
COL17A1-202ENST00000369733 EGFEM1PQ0D2K5 195 aa11.29□□□□□ -0.6
COL17A1-202ENST00000369733 CENPFP49454 3210 aa11.28□□□□□ -0.6
COL17A1-202ENST00000369733 C1orf137Q5JT78 98 aa11.27□□□□□ -0.61
COL17A1-202ENST00000369733 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-202ENST00000369733 A8MTW9 85 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 C6orf223Q8N319 242 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 CACNA1AO00555 2505 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 TMEM254Q8TBM7 123 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 C4orf48Q5BLP8 95 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 NAV2Q8IVL1 2488 aa11.26□□□□□ -0.61
COL17A1-202ENST00000369733 FAM218AQ96MZ4 157 aa11.25□□□□□ -0.61
COL17A1-202ENST00000369733 A0A1B0GUV1 79 aa11.25□□□□□ -0.61
COL17A1-202ENST00000369733 C11orf72Q8NBR9 251 aa11.25□□□□□ -0.61
COL17A1-202ENST00000369733 IGLV1-51P01701 117 aa11.25□□□□□ -0.61
COL17A1-202ENST00000369733 CASC2Q6XLA1 102 aa11.24□□□□□ -0.61
COL17A1-202ENST00000369733 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.24□□□□□ -0.61
COL17A1-202ENST00000369733 PTPRBP23467 1997 aa11.24□□□□□ -0.61
COL17A1-202ENST00000369733 TRBV7-6A0A0J9YX20 115 aa11.24□□□□□ -0.61
COL17A1-202ENST00000369733 NOTCH2Q04721 2471 aa11.23□□□□□ -0.61
COL17A1-202ENST00000369733 INAFM1C9JVW0 142 aa11.23□□□□□ -0.61
COL17A1-202ENST00000369733 LINC00208Q96KT6 92 aa11.23□□□□□ -0.61
COL17A1-202ENST00000369733 IGLV5-45A0A087WSX0 123 aa11.22□□□□□ -0.61
COL17A1-202ENST00000369733 LINC01561Q8N1V8 128 aa11.22□□□□□ -0.61
COL17A1-202ENST00000369733 PRR15LQ9BU68 103 aa11.22□□□□□ -0.61
COL17A1-202ENST00000369733 HIVEP3Q5T1R4 2406 aa11.22□□□□□ -0.61
COL17A1-202ENST00000369733 NANOS2P60321 138 aaKnown RBP11.22□□□□□ -0.61
COL17A1-202ENST00000369733 CXCL6P80162 114 aa11.22□□□□□ -0.61
COL17A1-202ENST00000369733 Q8N9L7 120 aa11.21□□□□□ -0.61
COL17A1-202ENST00000369733 TRAV10A0A0B4J240 114 aa11.21□□□□□ -0.61
COL17A1-202ENST00000369733 SONP18583 2426 aaKnown RBP11.21□□□□□ -0.62
COL17A1-202ENST00000369733 TLN1Q9Y490 2541 aaKnown RBP11.2□□□□□ -0.62
COL17A1-202ENST00000369733 RPS28P62857 69 aaKnown RBP11.2□□□□□ -0.62
COL17A1-202ENST00000369733 MYO9AB2RTY4 2548 aa11.2□□□□□ -0.62
COL17A1-202ENST00000369733 PMAIP1Q13794 54 aa11.19□□□□□ -0.62
COL17A1-202ENST00000369733 PLA2G2AP14555 144 aa11.19□□□□□ -0.62
COL17A1-202ENST00000369733 IGHV3OR16-9A0A0B4J2B5 98 aa11.19□□□□□ -0.62
COL17A1-202ENST00000369733 PSPHP1O15172 72 aa11.19□□□□□ -0.62
COL17A1-202ENST00000369733 IGF2RP11717 2491 aa11.18□□□□□ -0.62
COL17A1-202ENST00000369733 PRO0628Q9UI54 55 aa11.18□□□□□ -0.62
COL17A1-202ENST00000369733 C4orf26Q17RF5 130 aa11.17□□□□□ -0.62
COL17A1-202ENST00000369733 Q9UF83 564 aa11.17□□□□□ -0.62
COL17A1-202ENST00000369733 SPINK6Q6UWN8 80 aa11.16□□□□□ -0.62
COL17A1-202ENST00000369733 FHL3Q13643 280 aa11.16□□□□□ -0.62
COL17A1-202ENST00000369733 IGHV4-30-4P0DP06 118 aa11.16□□□□□ -0.62
COL17A1-202ENST00000369733 LITAFQ99732 161 aa11.15□□□□□ -0.62
COL17A1-202ENST00000369733 PLAC8L1A1L4L8 177 aa11.15□□□□□ -0.63
COL17A1-202ENST00000369733 IGLV9-49A0A0B4J1Y8 123 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 C10orf25Q5T742 122 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 VPREB1P12018 145 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 ESRGQ1W209 222 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 REG3GQ6UW15 175 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 CCDC168Q8NDH2 2452 aa11.14□□□□□ -0.63
COL17A1-202ENST00000369733 LY6G6DO95868 133 aa11.13□□□□□ -0.63
COL17A1-202ENST00000369733 SPATA3Q8NHX4 192 aa11.13□□□□□ -0.63
COL17A1-202ENST00000369733 ZNF706Q9Y5V0 76 aaPredicted RBP11.12□□□□□ -0.63
COL17A1-202ENST00000369733 COL4A2P08572 1712 aa11.11□□□□□ -0.63
COL17A1-202ENST00000369733 BCE1O60756 84 aa11.11□□□□□ -0.63
COL17A1-202ENST00000369733 KRTAP10-9P60411 292 aa11.11□□□□□ -0.63
COL17A1-202ENST00000369733 SMCR5Q8TEV8 140 aa11.11□□□□□ -0.63
COL17A1-202ENST00000369733 C2orf48Q96LS8 159 aa11.1□□□□□ -0.63
COL17A1-202ENST00000369733 HCG22E2RYF7 251 aa11.08□□□□□ -0.63
COL17A1-202ENST00000369733 DEFB116Q30KQ4 102 aa11.08□□□□□ -0.63
COL17A1-202ENST00000369733 Q6ZRU5 148 aa11.08□□□□□ -0.63
COL17A1-202ENST00000369733 A0A087WSZ3 146 aa11.08□□□□□ -0.64
COL17A1-202ENST00000369733 H0Y9P7 68 aa11.08□□□□□ -0.64
COL17A1-202ENST00000369733 LYPD5Q6UWN5 251 aa11.07□□□□□ -0.64
COL17A1-202ENST00000369733 SMIM29Q86T20 159 aa11.07□□□□□ -0.64
COL17A1-202ENST00000369733 ABCA2Q9BZC7 2435 aa11.07□□□□□ -0.64
COL17A1-202ENST00000369733 MYO18BQ8IUG5 2567 aa11.06□□□□□ -0.64
COL17A1-202ENST00000369733 F8WDY8 70 aa11.06□□□□□ -0.64
COL17A1-202ENST00000369733 Q6ZQT0 140 aa11.06□□□□□ -0.64
COL17A1-202ENST00000369733 C16orf95Q9H693 158 aa11.06□□□□□ -0.64
COL17A1-202ENST00000369733 Q6ZTC4 211 aa11.05□□□□□ -0.64
COL17A1-202ENST00000369733 NHLRC4P0CG21 123 aaPredicted RBP11.05□□□□□ -0.64
COL17A1-202ENST00000369733 PCOTHQ58A44 107 aa11.05□□□□□ -0.64
COL17A1-202ENST00000369733 Q9BRP9 147 aa11.05□□□□□ -0.64
COL17A1-202ENST00000369733 OXLD1Q5BKU9 147 aa11.05□□□□□ -0.64
COL17A1-202ENST00000369733 NCOR2Q9Y618 2525 aa11.04□□□□□ -0.64
COL17A1-202ENST00000369733 IL17DQ8TAD2 202 aa11.04□□□□□ -0.64
COL17A1-202ENST00000369733 COL27A1Q8IZC6 1860 aaPredicted RBP11.04□□□□□ -0.64
COL17A1-202ENST00000369733 KLK9Q2XQG4 91 aa11.03□□□□□ -0.64
COL17A1-202ENST00000369733 K7ERS5 55 aa11.03□□□□□ -0.64
COL17A1-202ENST00000369733 KIAA0087Q14695 138 aa11.03□□□□□ -0.64
COL17A1-202ENST00000369733 LOC110117498A0A087WWA1 95 aa11.02□□□□□ -0.64
COL17A1-202ENST00000369733 LINC00474Q9P2X8 69 aa11.02□□□□□ -0.64
COL17A1-202ENST00000369733 hDV103S1A0JD37 113 aa11.02□□□□□ -0.65
COL17A1-202ENST00000369733 DNAH12Q6ZR08 3092 aa11.01□□□□□ -0.65
COL17A1-202ENST00000369733 IGHV6-1A0A0B4J1U7 121 aa11.01□□□□□ -0.65
COL17A1-202ENST00000369733 SMR3AQ99954 134 aa10.99□□□□□ -0.65
COL17A1-202ENST00000369733 PCSK5Q92824 1860 aa10.99□□□□□ -0.65
COL17A1-202ENST00000369733 C6orf48Q9UBA6 75 aa10.98□□□□□ -0.65
COL17A1-202ENST00000369733 TM2D3Q9BRN9 247 aa10.98□□□□□ -0.65
COL17A1-202ENST00000369733 M0R2N4 97 aa10.98□□□□□ -0.65
COL17A1-202ENST00000369733 C7orf33Q8WU49 177 aa10.97□□□□□ -0.65
COL17A1-202ENST00000369733 ELOF1P60002 83 aaKnown RBP10.97□□□□□ -0.65
COL17A1-202ENST00000369733 EIF4EBP3O60516 100 aaPredicted RBP10.97□□□□□ -0.65
COL17A1-202ENST00000369733 C1orf64Q8NEQ6 169 aa10.95□□□□□ -0.66
COL17A1-202ENST00000369733 C22orf24Q9Y442 160 aa10.95□□□□□ -0.66
COL17A1-202ENST00000369733 PRLHP81277 87 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms