RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 FHL3Q13643 280 aa13.2□□□□□ -0.3
CLIP2-202ENST00000361545 FAM236DA0A1B0GTK5 79 aa13.2□□□□□ -0.3
CLIP2-202ENST00000361545 FAM236CP0DP71 79 aa13.2□□□□□ -0.3
CLIP2-202ENST00000361545 PRR3P79522 188 aaKnown RBP13.2□□□□□ -0.3
CLIP2-202ENST00000361545 FLNBO75369 2602 aaKnown RBP13.2□□□□□ -0.3
CLIP2-202ENST00000361545 AGRNO00468 2067 aa13.2□□□□□ -0.3
CLIP2-202ENST00000361545 MPLKIPQ8TAP9 179 aa13.19□□□□□ -0.3
CLIP2-202ENST00000361545 XGP55808 180 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 C1orf134Q5TEV5 83 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 COX8CQ7Z4L0 72 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 CCDC179H3BU77 68 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 LINC00310P59036 64 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 CELA1Q9UNI1 258 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 TRBV10-3A0A0K0K1G6 114 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 A0A0U1RQV1 116 aa13.18□□□□□ -0.3
CLIP2-202ENST00000361545 LST1O00453 97 aa13.17□□□□□ -0.3
CLIP2-202ENST00000361545 WFDC13Q8IUB5 93 aa13.17□□□□□ -0.3
CLIP2-202ENST00000361545 MUC7Q8TAX7 377 aa13.17□□□□□ -0.3
CLIP2-202ENST00000361545 KRTAP24-1Q3LI83 254 aa13.16□□□□□ -0.3
CLIP2-202ENST00000361545 RPL28P46779 137 aaKnown RBP13.15□□□□□ -0.3
CLIP2-202ENST00000361545 COL4A2P08572 1712 aa13.15□□□□□ -0.3
CLIP2-202ENST00000361545 SEC61GP60059 68 aa13.15□□□□□ -0.3
CLIP2-202ENST00000361545 NHLRC4P0CG21 123 aaPredicted RBP13.14□□□□□ -0.31
CLIP2-202ENST00000361545 TSPEAR-AS2P59090 65 aa13.14□□□□□ -0.31
CLIP2-202ENST00000361545 SPTSSBQ8NFR3 76 aa13.14□□□□□ -0.31
CLIP2-202ENST00000361545 CSDC2Q9Y534 153 aaKnown RBP13.14□□□□□ -0.31
CLIP2-202ENST00000361545 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.13□□□□□ -0.31
CLIP2-202ENST00000361545 REG3GQ6UW15 175 aa13.12□□□□□ -0.31
CLIP2-202ENST00000361545 AMELXQ99217 191 aa13.12□□□□□ -0.31
CLIP2-202ENST00000361545 ATP5EP2Q5VTU8 51 aa13.11□□□□□ -0.31
CLIP2-202ENST00000361545 DNAH12Q6ZR08 3092 aa13.11□□□□□ -0.31
CLIP2-202ENST00000361545 F8P00451 2351 aa13.11□□□□□ -0.31
CLIP2-202ENST00000361545 A0A1B0GUV1 79 aa13.11□□□□□ -0.31
CLIP2-202ENST00000361545 LINC01556Q5JQF7 62 aa13.11□□□□□ -0.31
CLIP2-202ENST00000361545 C10orf25Q5T742 122 aa13.1□□□□□ -0.31
CLIP2-202ENST00000361545 CIRBP-AS1Q8TBR5 109 aa13.1□□□□□ -0.31
CLIP2-202ENST00000361545 NDUFC2-KCTD14E9PQ53 114 aa13.09□□□□□ -0.31
CLIP2-202ENST00000361545 C11orf72Q8NBR9 251 aa13.09□□□□□ -0.31
CLIP2-202ENST00000361545 C1orf137Q5JT78 98 aa13.09□□□□□ -0.31
CLIP2-202ENST00000361545 FAM240AA0A1B0GVK7 77 aa13.08□□□□□ -0.32
CLIP2-202ENST00000361545 ADAMTSL4-AS1Q5T5F5 129 aa13.08□□□□□ -0.32
CLIP2-202ENST00000361545 IMUPQ9GZP8 106 aa13.08□□□□□ -0.32
CLIP2-202ENST00000361545 SERP2Q8N6R1 65 aa13.08□□□□□ -0.32
CLIP2-202ENST00000361545 MRPL55Q7Z7F7 128 aaKnown RBP13.07□□□□□ -0.32
CLIP2-202ENST00000361545 V9GYY9 64 aa13.06□□□□□ -0.32
CLIP2-202ENST00000361545 A0A096LNJ9 63 aa13.06□□□□□ -0.32
CLIP2-202ENST00000361545 MDFIQ99750 246 aa13.05□□□□□ -0.32
CLIP2-202ENST00000361545 Q6ZRU5 148 aa13.05□□□□□ -0.32
CLIP2-202ENST00000361545 COX7CP15954 63 aa13.04□□□□□ -0.32
CLIP2-202ENST00000361545 NTM-AS1Q6ZSK4 140 aa13.04□□□□□ -0.32
CLIP2-202ENST00000361545 HECTD1Q9ULT8 2610 aa13.04□□□□□ -0.32
CLIP2-202ENST00000361545 SBSPONQ8IVN8 264 aa13.03□□□□□ -0.32
CLIP2-202ENST00000361545 PRRC2CQ9Y520 2896 aaKnown RBP13.03□□□□□ -0.32
CLIP2-202ENST00000361545 Q8N814 137 aa13.03□□□□□ -0.32
CLIP2-202ENST00000361545 C2orf48Q96LS8 159 aa13.03□□□□□ -0.32
CLIP2-202ENST00000361545 KIF25-AS1Q9Y6Z4 181 aa13.02□□□□□ -0.32
CLIP2-202ENST00000361545 ESRGQ1W209 222 aa13.01□□□□□ -0.33
CLIP2-202ENST00000361545 A0A087WYN8 130 aa13□□□□□ -0.33
CLIP2-202ENST00000361545 SNURFQ9Y675 71 aa12.99□□□□□ -0.33
CLIP2-202ENST00000361545 PTPRBP23467 1997 aa12.99□□□□□ -0.33
CLIP2-202ENST00000361545 A8MTW9 85 aa12.97□□□□□ -0.33
CLIP2-202ENST00000361545 CEP350Q5VT06 3117 aa12.97□□□□□ -0.33
CLIP2-202ENST00000361545 FSHBP01225 129 aa12.96□□□□□ -0.33
CLIP2-202ENST00000361545 FAM19A3Q7Z5A8 133 aa12.96□□□□□ -0.33
CLIP2-202ENST00000361545 Q9BRP9 147 aa12.96□□□□□ -0.33
CLIP2-202ENST00000361545 Q6Q795 121 aa12.96□□□□□ -0.33
CLIP2-202ENST00000361545 X6R8D5 127 aa12.95□□□□□ -0.34
CLIP2-202ENST00000361545 F8WDY8 70 aa12.95□□□□□ -0.34
CLIP2-202ENST00000361545 PRLHP81277 87 aa12.95□□□□□ -0.34
CLIP2-202ENST00000361545 PRR4Q16378 134 aa12.95□□□□□ -0.34
CLIP2-202ENST00000361545 FAM19A4Q96LR4 140 aa12.94□□□□□ -0.34
CLIP2-202ENST00000361545 NDUFC1O43677 76 aa12.93□□□□□ -0.34
CLIP2-202ENST00000361545 FAM30AQ9NZY2 134 aa12.93□□□□□ -0.34
CLIP2-202ENST00000361545 COL27A1Q8IZC6 1860 aaPredicted RBP12.93□□□□□ -0.34
CLIP2-202ENST00000361545 ATP5EP56381 51 aaPredicted RBP12.91□□□□□ -0.34
CLIP2-202ENST00000361545 LINC00315P59091 139 aa12.91□□□□□ -0.34
CLIP2-202ENST00000361545 PCSK5Q92824 1860 aa12.91□□□□□ -0.34
CLIP2-202ENST00000361545 PRYO14603 147 aa12.91□□□□□ -0.34
CLIP2-202ENST00000361545 IGHV6-1A0A0B4J1U7 121 aa12.9□□□□□ -0.34
CLIP2-202ENST00000361545 C22orf24Q9Y442 160 aa12.9□□□□□ -0.34
CLIP2-202ENST00000361545 Q9UF83 564 aa12.9□□□□□ -0.34
CLIP2-202ENST00000361545 C1orf195Q5TG92 126 aa12.89□□□□□ -0.35
CLIP2-202ENST00000361545 LINC01561Q8N1V8 128 aa12.89□□□□□ -0.35
CLIP2-202ENST00000361545 MUC4Q99102 2169 aa12.89□□□□□ -0.35
CLIP2-202ENST00000361545 Q8N9L7 120 aa12.88□□□□□ -0.35
CLIP2-202ENST00000361545 A0A087WSZ3 146 aa12.87□□□□□ -0.35
CLIP2-202ENST00000361545 IGHV3OR16-9A0A0B4J2B5 98 aa12.87□□□□□ -0.35
CLIP2-202ENST00000361545 Q6JHZ5 121 aa12.86□□□□□ -0.35
CLIP2-202ENST00000361545 Q8N3U1 123 aa12.85□□□□□ -0.35
CLIP2-202ENST00000361545 LINC00337Q8N6G1 96 aa12.85□□□□□ -0.35
CLIP2-202ENST00000361545 DEFB116Q30KQ4 102 aa12.85□□□□□ -0.35
CLIP2-202ENST00000361545 RETNLBQ9BQ08 111 aa12.85□□□□□ -0.35
CLIP2-202ENST00000361545 SMIM26A0A096LP01 95 aa12.84□□□□□ -0.35
CLIP2-202ENST00000361545 LINC00575Q6W349 94 aa12.83□□□□□ -0.36
CLIP2-202ENST00000361545 SMCR5Q8TEV8 140 aa12.83□□□□□ -0.36
CLIP2-202ENST00000361545 Q8NAQ8 132 aa12.82□□□□□ -0.36
CLIP2-202ENST00000361545 IGLV5-39A0A0G2JS06 123 aa12.81□□□□□ -0.36
CLIP2-202ENST00000361545 A0A087WVE0 104 aa12.81□□□□□ -0.36
CLIP2-202ENST00000361545 USP24Q9UPU5 2620 aa12.8□□□□□ -0.36
CLIP2-202ENST00000361545 MGAM2Q2M2H8 2515 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 339.6 ms