RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 UQCRQO14949 82 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 CXCL5P42830 114 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 LINC00959A0A1B0GUT2 108 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 TRBV6-4A0A1B0GX49 114 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 NKAPP1Q8N9T2 125 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 TEX15Q9BXT5 2789 aa8.88□□□□□ -0.99
SNRNP48-201ENST00000342415 ZANQ9Y493 2812 aa8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 NTM-AS1Q6ZSK4 140 aa8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 C3orf22Q8N5N4 141 aa8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 SMG1Q96Q15 3661 aaKnown RBP8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 JMJD7-PLA2G4BH0Y9G9 81 aa8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 SOSTDC1Q6X4U4 206 aa8.87□□□□□ -0.99
SNRNP48-201ENST00000342415 TMEM256-PLSCR3K7ERE1 68 aa8.86□□□□□ -0.99
SNRNP48-201ENST00000342415 LINC00337Q8N6G1 96 aa8.86□□□□□ -0.99
SNRNP48-201ENST00000342415 INAFM1C9JVW0 142 aa8.85□□□□□ -0.99
SNRNP48-201ENST00000342415 A8MTW9 85 aa8.85□□□□□ -0.99
SNRNP48-201ENST00000342415 SPART-AS1P0CW21 52 aa8.85□□□□□ -0.99
SNRNP48-201ENST00000342415 C11orf72Q8NBR9 251 aa8.85□□□□□ -0.99
SNRNP48-201ENST00000342415 CSMD1Q96PZ7 3565 aa8.84□□□□□ -0.99
SNRNP48-201ENST00000342415 USP17L23D6RBM5 183 aa8.84□□□□□ -0.99
SNRNP48-201ENST00000342415 J3KT08 172 aa8.84□□□□□ -0.99
SNRNP48-201ENST00000342415 UPK3BQ9BT76 320 aa8.83□□□□□ -1
SNRNP48-201ENST00000342415 BRI3O95415 125 aa8.83□□□□□ -1
SNRNP48-201ENST00000342415 FAM218AQ96MZ4 157 aa8.83□□□□□ -1
SNRNP48-201ENST00000342415 Q6ZQY7 126 aa8.83□□□□□ -1
SNRNP48-201ENST00000342415 LRRC75A-AS1Q8N1F1 130 aa8.83□□□□□ -1
SNRNP48-201ENST00000342415 BEAN1Q3B7T3 259 aa8.82□□□□□ -1
SNRNP48-201ENST00000342415 C9orf66Q5T8R8 295 aa8.82□□□□□ -1
SNRNP48-201ENST00000342415 C1orf43Q9BWL3 253 aa8.82□□□□□ -1
SNRNP48-201ENST00000342415 UBE2DNLQ8IWF7 75 aa8.82□□□□□ -1
SNRNP48-201ENST00000342415 PSCAO43653 123 aa8.81□□□□□ -1
SNRNP48-201ENST00000342415 Q6Q795 121 aa8.81□□□□□ -1
SNRNP48-201ENST00000342415 FAM240AA0A1B0GVK7 77 aa8.81□□□□□ -1
SNRNP48-201ENST00000342415 LITAFQ99732 161 aa8.81□□□□□ -1
SNRNP48-201ENST00000342415 UNQ6190/PRO20217Q6UXQ8 127 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 SBSPONQ8IVN8 264 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 DIRC1Q969H9 104 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 FAM110AQ9BQ89 295 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 RPL28P46779 137 aaKnown RBP8.8□□□□□ -1
SNRNP48-201ENST00000342415 LINC00846Q9NV44 126 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 LOC107984640A0A0U1RRK4 108 aa8.8□□□□□ -1
SNRNP48-201ENST00000342415 COX7CP15954 63 aa8.79□□□□□ -1
SNRNP48-201ENST00000342415 IMUPQ9GZP8 106 aa8.79□□□□□ -1
SNRNP48-201ENST00000342415 IGSF10Q6WRI0 2623 aa8.79□□□□□ -1
SNRNP48-201ENST00000342415 CRYBG3Q68DQ2 2970 aa8.78□□□□□ -1
SNRNP48-201ENST00000342415 FHL2Q14192 279 aa8.78□□□□□ -1
SNRNP48-201ENST00000342415 NREPQ16612 68 aa8.78□□□□□ -1
SNRNP48-201ENST00000342415 SNURFQ9Y675 71 aa8.78□□□□□ -1
SNRNP48-201ENST00000342415 IGLV5-39A0A0G2JS06 123 aa8.78□□□□□ -1
SNRNP48-201ENST00000342415 A0A087WZ39 114 aa8.77□□□□□ -1
SNRNP48-201ENST00000342415 C6orf223Q8N319 242 aa8.77□□□□□ -1.01
SNRNP48-201ENST00000342415 UBR5O95071 2799 aaPredicted RBP8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 HILS1P60008 231 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 UBE2BP63146 152 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 CD164L2Q6UWJ8 174 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 SERP2Q8N6R1 65 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 CSDC2Q9Y534 153 aaKnown RBP8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 F8WEM9 126 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 FAM19A1Q7Z5A9 133 aa8.76□□□□□ -1.01
SNRNP48-201ENST00000342415 COX7BP24311 80 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 KLK9Q2XQG4 91 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 CYSRT1A8MQ03 144 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 CUBNO60494 3623 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 DCHS2Q6V1P9 2916 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 UNC79Q9P2D8 2635 aa8.75□□□□□ -1.01
SNRNP48-201ENST00000342415 IGKV2-28A0A075B6P5 120 aa8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 IGKV2D-28P01615 120 aa8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 C3orf84H3BNL1 204 aa8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 UTP20O75691 2785 aaKnown RBP8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 SVEP1Q4LDE5 3571 aa8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 LY6G6DO95868 133 aa8.74□□□□□ -1.01
SNRNP48-201ENST00000342415 IGHV3OR16-9A0A0B4J2B5 98 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 SHISA2Q6UWI4 295 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 Q8N3U1 123 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 PPDPFQ9H3Y8 114 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 NHLRC4P0CG21 123 aaPredicted RBP8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 NBEAL1Q6ZS30 2694 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 NF1P21359 2839 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 ETDCA0A1B0GVM5 59 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 M0QXV9 152 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 IGLV1-51P01701 117 aa8.73□□□□□ -1.01
SNRNP48-201ENST00000342415 NOTCH1P46531 2555 aa8.72□□□□□ -1.01
SNRNP48-201ENST00000342415 Q8IZM0 81 aa8.72□□□□□ -1.01
SNRNP48-201ENST00000342415 Q8N814 137 aa8.72□□□□□ -1.01
SNRNP48-201ENST00000342415 HRNRQ86YZ3 2850 aaPredicted RBP8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 FBN2P35556 2912 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 IGLV5-45A0A087WSX0 123 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 CCKP06307 115 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 LYRM9A8MSI8 78 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 FUSP35637 526 aaKnown RBP eCLIP8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 OXLD1Q5BKU9 147 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 SMCR5Q8TEV8 140 aa8.7□□□□□ -1.02
SNRNP48-201ENST00000342415 TRBV7-7A0A0K0K1E9 115 aa8.69□□□□□ -1.02
SNRNP48-201ENST00000342415 TRBV10-3A0A0K0K1G6 114 aa8.69□□□□□ -1.02
SNRNP48-201ENST00000342415 Q6JHZ5 121 aa8.68□□□□□ -1.02
SNRNP48-201ENST00000342415 IGKV2-24A0A0C4DH68 120 aa8.68□□□□□ -1.02
SNRNP48-201ENST00000342415 A0A096LNI7 61 aa8.67□□□□□ -1.02
SNRNP48-201ENST00000342415 SMIM9A6NGZ8 99 aa8.67□□□□□ -1.02
SNRNP48-201ENST00000342415 MPLKIPQ8TAP9 179 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms