RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 C6orf48Q9UBA6 75 aa12.14□□□□□ -0.47
SYNE4-202ENST00000340477 IGLV5-45A0A087WSX0 123 aa12.13□□□□□ -0.47
SYNE4-202ENST00000340477 CXCL5P42830 114 aa12.13□□□□□ -0.47
SYNE4-202ENST00000340477 C10orf25Q5T742 122 aa12.13□□□□□ -0.47
SYNE4-202ENST00000340477 TLX1NBP0CAT3 122 aa12.12□□□□□ -0.47
SYNE4-202ENST00000340477 C2orf82Q6UX34 121 aa12.12□□□□□ -0.47
SYNE4-202ENST00000340477 COLCA2A8K830 154 aa12.11□□□□□ -0.47
SYNE4-202ENST00000340477 SMIM1B2RUZ4 78 aa12.11□□□□□ -0.47
SYNE4-202ENST00000340477 IGLC3P0DOY3 106 aa12.11□□□□□ -0.47
SYNE4-202ENST00000340477 COX7B2Q8TF08 81 aa12.1□□□□□ -0.47
SYNE4-202ENST00000340477 SPINK8P0C7L1 97 aa12.09□□□□□ -0.47
SYNE4-202ENST00000340477 NDUFC2-KCTD14E9PQ53 114 aa12.08□□□□□ -0.48
SYNE4-202ENST00000340477 F8VRH5 84 aa12.08□□□□□ -0.48
SYNE4-202ENST00000340477 GAGE2EQ4V326 116 aa12.08□□□□□ -0.48
SYNE4-202ENST00000340477 IFI27L1Q96BM0 104 aa12.08□□□□□ -0.48
SYNE4-202ENST00000340477 GAGE2DQ9UEU5 116 aa12.08□□□□□ -0.48
SYNE4-202ENST00000340477 Q6ZRP5 223 aa12.07□□□□□ -0.48
SYNE4-202ENST00000340477 KRTAP10-4P60372 401 aaPredicted RBP12.06□□□□□ -0.48
SYNE4-202ENST00000340477 C9orf116Q5BN46 136 aaPredicted RBP12.06□□□□□ -0.48
SYNE4-202ENST00000340477 CHTOPQ9Y3Y2 248 aaKnown RBP12.06□□□□□ -0.48
SYNE4-202ENST00000340477 SERF1AO75920 110 aa12.05□□□□□ -0.48
SYNE4-202ENST00000340477 ZNF22P17026 224 aaPredicted RBP12.05□□□□□ -0.48
SYNE4-202ENST00000340477 FAM19A2Q8N3H0 131 aa12.05□□□□□ -0.48
SYNE4-202ENST00000340477 FLG2Q5D862 2391 aaPredicted RBP12.05□□□□□ -0.48
SYNE4-202ENST00000340477 TRAV12-1A0A0B4J245 112 aa12.04□□□□□ -0.48
SYNE4-202ENST00000340477 SCO1O75880 301 aa12.04□□□□□ -0.48
SYNE4-202ENST00000340477 TMEM170BQ5T4T1 132 aa12.04□□□□□ -0.48
SYNE4-202ENST00000340477 A0A1W2PNN7 141 aa12.03□□□□□ -0.48
SYNE4-202ENST00000340477 LEPROTL1O95214 131 aa12.03□□□□□ -0.48
SYNE4-202ENST00000340477 C11orf86A6NJI1 115 aa12.02□□□□□ -0.49
SYNE4-202ENST00000340477 PRR3P79522 188 aaKnown RBP12.01□□□□□ -0.49
SYNE4-202ENST00000340477 FAM19A5Q7Z5A7 132 aaPredicted RBP12.01□□□□□ -0.49
SYNE4-202ENST00000340477 HSPB8Q9UJY1 196 aa12.01□□□□□ -0.49
SYNE4-202ENST00000340477 IGLV5-39A0A0G2JS06 123 aa11.99□□□□□ -0.49
SYNE4-202ENST00000340477 H0Y8G0 127 aa11.99□□□□□ -0.49
SYNE4-202ENST00000340477 J3QL48 77 aa11.98□□□□□ -0.49
SYNE4-202ENST00000340477 SFTA2Q6UW10 78 aa11.98□□□□□ -0.49
SYNE4-202ENST00000340477 FAM168BA1KXE4 195 aa11.97□□□□□ -0.49
SYNE4-202ENST00000340477 LINC00310P59036 64 aa11.97□□□□□ -0.49
SYNE4-202ENST00000340477 DMBT1Q9UGM3 2413 aaPredicted RBP11.97□□□□□ -0.49
SYNE4-202ENST00000340477 M0QXV9 152 aa11.96□□□□□ -0.49
SYNE4-202ENST00000340477 PHF5AQ7RTV0 110 aaKnown RBP11.96□□□□□ -0.49
SYNE4-202ENST00000340477 FABP4P15090 132 aa11.95□□□□□ -0.5
SYNE4-202ENST00000340477 C9orf129Q5T035 196 aaKnown RBP11.95□□□□□ -0.5
SYNE4-202ENST00000340477 MYCBP2O75592 4640 aa11.95□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BKO60814 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BJP06899 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BOP23527 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BBP33778 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HNRNPA3P51991 378 aaKnown RBP11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BDP58876 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BCP62807 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 UBE2BP63146 152 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST2H2BEQ16778 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BHQ93079 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BNQ99877 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 HIST1H2BMQ99879 126 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 XAGE1AQ9HD64 81 aa11.94□□□□□ -0.5
SYNE4-202ENST00000340477 KRTAP29-1A8MX34 341 aaPredicted RBP11.93□□□□□ -0.5
SYNE4-202ENST00000340477 OXTP01178 125 aa11.93□□□□□ -0.5
SYNE4-202ENST00000340477 TMEM223A0PJW6 202 aa11.92□□□□□ -0.5
SYNE4-202ENST00000340477 NUPR1O60356 82 aa11.92□□□□□ -0.5
SYNE4-202ENST00000340477 PLNP26678 52 aa11.92□□□□□ -0.5
SYNE4-202ENST00000340477 ODF1Q14990 250 aa11.92□□□□□ -0.5
SYNE4-202ENST00000340477 MAP1LC3CQ9BXW4 147 aa11.92□□□□□ -0.5
SYNE4-202ENST00000340477 S100A1P23297 94 aa11.91□□□□□ -0.5
SYNE4-202ENST00000340477 ERG28Q9UKR5 140 aa11.91□□□□□ -0.5
SYNE4-202ENST00000340477 PKHD1L1Q86WI1 4243 aa11.91□□□□□ -0.5
SYNE4-202ENST00000340477 PFN2P35080 140 aa11.9□□□□□ -0.5
SYNE4-202ENST00000340477 PSORS1C2Q9UIG4 136 aa11.9□□□□□ -0.5
SYNE4-202ENST00000340477 COX17Q14061 63 aa11.89□□□□□ -0.51
SYNE4-202ENST00000340477 LBHQ53QV2 105 aaPredicted RBP11.89□□□□□ -0.51
SYNE4-202ENST00000340477 C1orf137Q5JT78 98 aa11.89□□□□□ -0.51
SYNE4-202ENST00000340477 DPM2O94777 84 aa11.88□□□□□ -0.51
SYNE4-202ENST00000340477 HERVK_113P61574 105 aa11.87□□□□□ -0.51
SYNE4-202ENST00000340477 SERTAD4-AS1Q5TG53 156 aa11.87□□□□□ -0.51
SYNE4-202ENST00000340477 SPINK6Q6UWN8 80 aa11.87□□□□□ -0.51
SYNE4-202ENST00000340477 ZNF625Q96I27 306 aaPredicted RBP11.87□□□□□ -0.51
SYNE4-202ENST00000340477 TP73-AS1Q9UF72 201 aa11.86□□□□□ -0.51
SYNE4-202ENST00000340477 C22orf24Q9Y442 160 aa11.86□□□□□ -0.51
SYNE4-202ENST00000340477 IGKCP01834 107 aa11.85□□□□□ -0.51
SYNE4-202ENST00000340477 KRTAP7-1Q8IUC3 87 aa11.85□□□□□ -0.51
SYNE4-202ENST00000340477 NKAPP1Q8N9T2 125 aa11.85□□□□□ -0.51
SYNE4-202ENST00000340477 REG3GQ6UW15 175 aa11.84□□□□□ -0.51
SYNE4-202ENST00000340477 MRPL55Q7Z7F7 128 aaKnown RBP11.84□□□□□ -0.51
SYNE4-202ENST00000340477 PLA2G2DQ9UNK4 145 aa11.84□□□□□ -0.51
SYNE4-202ENST00000340477 ATP6V1G1O75348 118 aa11.83□□□□□ -0.52
SYNE4-202ENST00000340477 LINC00158P58513 81 aa11.83□□□□□ -0.52
SYNE4-202ENST00000340477 HERV-K104P63124 156 aa11.83□□□□□ -0.52
SYNE4-202ENST00000340477 MEIG1Q5JSS6 88 aa11.83□□□□□ -0.52
SYNE4-202ENST00000340477 PLEKHB2Q96CS7 222 aa11.83□□□□□ -0.52
SYNE4-202ENST00000340477 LINC00587B1AMM8 73 aa11.82□□□□□ -0.52
SYNE4-202ENST00000340477 PMCHL2Q9BQD1 86 aa11.82□□□□□ -0.52
SYNE4-202ENST00000340477 MYMXA0A1B0GTQ4 84 aa11.81□□□□□ -0.52
SYNE4-202ENST00000340477 LEPROTO15243 131 aa11.81□□□□□ -0.52
SYNE4-202ENST00000340477 SND1-IT1Q9HBX3 110 aa11.81□□□□□ -0.52
SYNE4-202ENST00000340477 NDUFA12Q9UI09 145 aa11.81□□□□□ -0.52
SYNE4-202ENST00000340477 SYS1-DBNDD2H3BUS1 97 aa11.8□□□□□ -0.52
SYNE4-202ENST00000340477 IGLV7-43P04211 117 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms