RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LINC01547P58512 204 aaPredicted RBP10.45□□□□□ -0.74
COL7A1-201ENST00000328333 CENPEQ02224 2701 aa10.44□□□□□ -0.74
COL7A1-201ENST00000328333 POM121L12Q8N7R1 296 aa10.44□□□□□ -0.74
COL7A1-201ENST00000328333 Q6YL49 198 aa10.44□□□□□ -0.74
COL7A1-201ENST00000328333 A0A096LNI7 61 aa10.43□□□□□ -0.74
COL7A1-201ENST00000328333 SPINK6Q6UWN8 80 aa10.43□□□□□ -0.74
COL7A1-201ENST00000328333 SMIM1B2RUZ4 78 aa10.43□□□□□ -0.74
COL7A1-201ENST00000328333 AMELXQ99217 191 aa10.43□□□□□ -0.74
COL7A1-201ENST00000328333 PLAC8L1A1L4L8 177 aa10.42□□□□□ -0.74
COL7A1-201ENST00000328333 H3BPC8 53 aa10.42□□□□□ -0.74
COL7A1-201ENST00000328333 PSMG3-AS1Q96PY0 264 aa10.42□□□□□ -0.74
COL7A1-201ENST00000328333 LOC100131303A0A0U1RQF7 123 aa10.41□□□□□ -0.74
COL7A1-201ENST00000328333 A0A1B0GUV1 79 aa10.41□□□□□ -0.74
COL7A1-201ENST00000328333 ADORA2A-AS1P86434 159 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 LINC00242Q5T6M2 205 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 Q6ZPA2 131 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 SPAG11AQ6PDA7 123 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 CYSRT1A8MQ03 144 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 LINC00575Q6W349 94 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 LINC00310P59036 64 aa10.4□□□□□ -0.74
COL7A1-201ENST00000328333 C8orf87E5RJ46 101 aa10.39□□□□□ -0.75
COL7A1-201ENST00000328333 KPRPQ5T749 579 aaPredicted RBP10.39□□□□□ -0.75
COL7A1-201ENST00000328333 A0A087WYN8 130 aa10.39□□□□□ -0.75
COL7A1-201ENST00000328333 LMO4P61968 165 aa10.39□□□□□ -0.75
COL7A1-201ENST00000328333 LINC01546A6NGU7 62 aa10.38□□□□□ -0.75
COL7A1-201ENST00000328333 LRCOL1A6NCL2 159 aa10.38□□□□□ -0.75
COL7A1-201ENST00000328333 CR1P17927 2039 aa10.38□□□□□ -0.75
COL7A1-201ENST00000328333 NANOS2P60321 138 aaKnown RBP10.38□□□□□ -0.75
COL7A1-201ENST00000328333 RPL37AP8A6NKH3 93 aa10.37□□□□□ -0.75
COL7A1-201ENST00000328333 CDIP1Q9H305 208 aa10.37□□□□□ -0.75
COL7A1-201ENST00000328333 A0A087WVE0 104 aa10.36□□□□□ -0.75
COL7A1-201ENST00000328333 C2orf48Q96LS8 159 aa10.36□□□□□ -0.75
COL7A1-201ENST00000328333 CRIP3Q6Q6R5 217 aa10.36□□□□□ -0.75
COL7A1-201ENST00000328333 IGHV4-30-4P0DP06 118 aa10.36□□□□□ -0.75
COL7A1-201ENST00000328333 IGHV4-31P0DP07 118 aa10.36□□□□□ -0.75
COL7A1-201ENST00000328333 IGLV9-49A0A0B4J1Y8 123 aa10.35□□□□□ -0.75
COL7A1-201ENST00000328333 PPDPFQ9H3Y8 114 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 ZNF580Q9UK33 172 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 IGLV1-40P01703 118 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 ZNF843Q8N446 348 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 ACYP2P14621 99 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 IGHV6-1A0A0B4J1U7 121 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 C1orf64Q8NEQ6 169 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 BRI3O95415 125 aa10.33□□□□□ -0.76
COL7A1-201ENST00000328333 PRR9Q5T870 116 aa10.32□□□□□ -0.76
COL7A1-201ENST00000328333 BBC3Q96PG8 261 aaPredicted RBP10.32□□□□□ -0.76
COL7A1-201ENST00000328333 Q8N2B8 174 aa10.32□□□□□ -0.76
COL7A1-201ENST00000328333 NBEAL1Q6ZS30 2694 aa10.32□□□□□ -0.76
COL7A1-201ENST00000328333 A0A1B0GU69 56 aa10.31□□□□□ -0.76
COL7A1-201ENST00000328333 ADAMTSL4-AS1Q5T5F5 129 aa10.31□□□□□ -0.76
COL7A1-201ENST00000328333 ERC2-IT1O76042 136 aa10.31□□□□□ -0.76
COL7A1-201ENST00000328333 LINC00846Q9NV44 126 aa10.31□□□□□ -0.76
COL7A1-201ENST00000328333 ZNF702PQ9H963 129 aa10.3□□□□□ -0.76
COL7A1-201ENST00000328333 CRIP2P52943 208 aaPredicted RBP10.3□□□□□ -0.76
COL7A1-201ENST00000328333 Q9BRP9 147 aa10.3□□□□□ -0.76
COL7A1-201ENST00000328333 C11orf21Q9P2W6 132 aa10.3□□□□□ -0.76
COL7A1-201ENST00000328333 MSMPQ1L6U9 139 aa10.29□□□□□ -0.76
COL7A1-201ENST00000328333 BEAN1Q3B7T3 259 aa10.29□□□□□ -0.76
COL7A1-201ENST00000328333 MGAM2Q2M2H8 2515 aa10.28□□□□□ -0.76
COL7A1-201ENST00000328333 SHISA2Q6UWI4 295 aa10.28□□□□□ -0.76
COL7A1-201ENST00000328333 Q6ZTC4 211 aa10.28□□□□□ -0.76
COL7A1-201ENST00000328333 PROK1P58294 105 aa10.28□□□□□ -0.76
COL7A1-201ENST00000328333 TSPEAR-AS2P59090 65 aa10.28□□□□□ -0.76
COL7A1-201ENST00000328333 LOC110117498A0A087WWA1 95 aa10.27□□□□□ -0.76
COL7A1-201ENST00000328333 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.27□□□□□ -0.77
COL7A1-201ENST00000328333 PRM2P04554 102 aa10.27□□□□□ -0.77
COL7A1-201ENST00000328333 CYP4F30PQ9H0H9 118 aa10.26□□□□□ -0.77
COL7A1-201ENST00000328333 IGLV2-18A0A075B6J9 118 aa10.26□□□□□ -0.77
COL7A1-201ENST00000328333 C1orf229Q6ZS94 237 aaPredicted RBP10.25□□□□□ -0.77
COL7A1-201ENST00000328333 URB1-AS1Q96HZ7 61 aa10.25□□□□□ -0.77
COL7A1-201ENST00000328333 NUPR2A6NF83 97 aa10.25□□□□□ -0.77
COL7A1-201ENST00000328333 UNQ6190/PRO20217Q6UXQ8 127 aa10.25□□□□□ -0.77
COL7A1-201ENST00000328333 Q6ZSV7 163 aa10.24□□□□□ -0.77
COL7A1-201ENST00000328333 RETNLBQ9BQ08 111 aa10.24□□□□□ -0.77
COL7A1-201ENST00000328333 LINC00337Q8N6G1 96 aa10.23□□□□□ -0.77
COL7A1-201ENST00000328333 IGLV5-39A0A0G2JS06 123 aa10.23□□□□□ -0.77
COL7A1-201ENST00000328333 A0A087WSZ3 146 aa10.22□□□□□ -0.77
COL7A1-201ENST00000328333 C6orf48Q9UBA6 75 aa10.22□□□□□ -0.77
COL7A1-201ENST00000328333 GAS8-AS1O95177 125 aa10.22□□□□□ -0.77
COL7A1-201ENST00000328333 CENPFP49454 3210 aa10.22□□□□□ -0.77
COL7A1-201ENST00000328333 NHLRC4P0CG21 123 aaPredicted RBP10.22□□□□□ -0.77
COL7A1-201ENST00000328333 CIRBP-AS1Q8TBR5 109 aa10.22□□□□□ -0.77
COL7A1-201ENST00000328333 C11orf71Q6IPW1 123 aa10.21□□□□□ -0.78
COL7A1-201ENST00000328333 A0A096LNJ9 63 aa10.2□□□□□ -0.78
COL7A1-201ENST00000328333 COX6A2Q02221 97 aa10.2□□□□□ -0.78
COL7A1-201ENST00000328333 TRAV22A0A0B4J277 110 aa10.19□□□□□ -0.78
COL7A1-201ENST00000328333 PCOTHQ58A44 107 aa10.19□□□□□ -0.78
COL7A1-201ENST00000328333 FLNAP21333 2647 aaKnown RBP10.19□□□□□ -0.78
COL7A1-201ENST00000328333 LINC00482Q8N8I6 264 aa10.19□□□□□ -0.78
COL7A1-201ENST00000328333 Q8NA96 180 aa10.19□□□□□ -0.78
COL7A1-201ENST00000328333 C4orf26Q17RF5 130 aa10.18□□□□□ -0.78
COL7A1-201ENST00000328333 NOTCH1P46531 2555 aa10.18□□□□□ -0.78
COL7A1-201ENST00000328333 C11orf72Q8NBR9 251 aa10.18□□□□□ -0.78
COL7A1-201ENST00000328333 FLNBO75369 2602 aaKnown RBP10.18□□□□□ -0.78
COL7A1-201ENST00000328333 C7orf65Q6ZTY9 151 aa10.18□□□□□ -0.78
COL7A1-201ENST00000328333 SBSPONQ8IVN8 264 aa10.18□□□□□ -0.78
COL7A1-201ENST00000328333 ATP11AUNQ6ZP68 121 aa10.17□□□□□ -0.78
COL7A1-201ENST00000328333 X6R8D5 127 aa10.17□□□□□ -0.78
COL7A1-201ENST00000328333 C9orf116Q5BN46 136 aaPredicted RBP10.17□□□□□ -0.78
COL7A1-201ENST00000328333 CFAP46Q8IYW2 2715 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 153.8 ms