RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SHISA2Q6UWI4 295 aa10.02□□□□□ -0.8
CSPG4-201ENST00000308508 Q9BRP9 147 aa10.02□□□□□ -0.81
CSPG4-201ENST00000308508 LTBP2Q14767 1821 aa10.02□□□□□ -0.81
CSPG4-201ENST00000308508 URB1-AS1Q96HZ7 61 aa10.02□□□□□ -0.81
CSPG4-201ENST00000308508 HIVEP3Q5T1R4 2406 aa10.02□□□□□ -0.81
CSPG4-201ENST00000308508 SPINK1P00995 79 aa10.02□□□□□ -0.81
CSPG4-201ENST00000308508 PRR3P79522 188 aaKnown RBP10.01□□□□□ -0.81
CSPG4-201ENST00000308508 AMELXQ99217 191 aa10.01□□□□□ -0.81
CSPG4-201ENST00000308508 ZNF702PQ9H963 129 aa10.01□□□□□ -0.81
CSPG4-201ENST00000308508 LINC00846Q9NV44 126 aa10.01□□□□□ -0.81
CSPG4-201ENST00000308508 C10orf99Q6UWK7 81 aa10□□□□□ -0.81
CSPG4-201ENST00000308508 IGLV1-40P01703 118 aa10□□□□□ -0.81
CSPG4-201ENST00000308508 RPS28P62857 69 aaKnown RBP9.99□□□□□ -0.81
CSPG4-201ENST00000308508 C1orf64Q8NEQ6 169 aa9.99□□□□□ -0.81
CSPG4-201ENST00000308508 PRM2P04554 102 aa9.99□□□□□ -0.81
CSPG4-201ENST00000308508 NOTCH2Q04721 2471 aa9.99□□□□□ -0.81
CSPG4-201ENST00000308508 A0A1W2PNU3 283 aaPredicted RBP9.99□□□□□ -0.81
CSPG4-201ENST00000308508 M0R2N4 97 aa9.99□□□□□ -0.81
CSPG4-201ENST00000308508 A0A087WSZ3 146 aa9.98□□□□□ -0.81
CSPG4-201ENST00000308508 A0A1B0GU69 56 aa9.98□□□□□ -0.81
CSPG4-201ENST00000308508 CCDC168Q8NDH2 2452 aa9.98□□□□□ -0.81
CSPG4-201ENST00000308508 CDIP1Q9H305 208 aa9.98□□□□□ -0.81
CSPG4-201ENST00000308508 RETNLBQ9BQ08 111 aa9.97□□□□□ -0.81
CSPG4-201ENST00000308508 SBSPONQ8IVN8 264 aa9.97□□□□□ -0.81
CSPG4-201ENST00000308508 C6orf223Q8N319 242 aa9.97□□□□□ -0.81
CSPG4-201ENST00000308508 C11orf71Q6IPW1 123 aa9.96□□□□□ -0.81
CSPG4-201ENST00000308508 WISP2O76076 250 aa9.95□□□□□ -0.82
CSPG4-201ENST00000308508 MYO9AB2RTY4 2548 aa9.95□□□□□ -0.82
CSPG4-201ENST00000308508 LINC01561Q8N1V8 128 aa9.95□□□□□ -0.82
CSPG4-201ENST00000308508 INAFM1C9JVW0 142 aa9.94□□□□□ -0.82
CSPG4-201ENST00000308508 BCE1O60756 84 aa9.94□□□□□ -0.82
CSPG4-201ENST00000308508 TP53AIP1Q9HCN2 124 aa9.93□□□□□ -0.82
CSPG4-201ENST00000308508 CUL9Q8IWT3 2517 aa9.93□□□□□ -0.82
CSPG4-201ENST00000308508 DEFB116Q30KQ4 102 aa9.93□□□□□ -0.82
CSPG4-201ENST00000308508 ACYP2P14621 99 aa9.93□□□□□ -0.82
CSPG4-201ENST00000308508 IGLV4-60A0A075B6I1 120 aa9.93□□□□□ -0.82
CSPG4-201ENST00000308508 C18orf65Q6ZTR6 163 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 COX8CQ7Z4L0 72 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 A0A1B0GUV1 79 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 C19orf84I3L1E1 186 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 C4orf26Q17RF5 130 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 C7orf65Q6ZTY9 151 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 C2orf48Q96LS8 159 aa9.92□□□□□ -0.82
CSPG4-201ENST00000308508 Q6ZTC4 211 aa9.91□□□□□ -0.82
CSPG4-201ENST00000308508 LINC01006Q8NI28 216 aa9.91□□□□□ -0.82
CSPG4-201ENST00000308508 C8orf87E5RJ46 101 aa9.91□□□□□ -0.82
CSPG4-201ENST00000308508 LY6G6CO95867 125 aa9.9□□□□□ -0.82
CSPG4-201ENST00000308508 SMIM29Q86T20 159 aa9.9□□□□□ -0.82
CSPG4-201ENST00000308508 ZNF580Q9UK33 172 aa9.89□□□□□ -0.83
CSPG4-201ENST00000308508 A0A096LNJ9 63 aa9.88□□□□□ -0.83
CSPG4-201ENST00000308508 Q9UF83 564 aa9.88□□□□□ -0.83
CSPG4-201ENST00000308508 LINC01556Q5JQF7 62 aa9.88□□□□□ -0.83
CSPG4-201ENST00000308508 NUPR2A6NF83 97 aa9.88□□□□□ -0.83
CSPG4-201ENST00000308508 LINC00337Q8N6G1 96 aa9.88□□□□□ -0.83
CSPG4-201ENST00000308508 FHL2Q14192 279 aa9.87□□□□□ -0.83
CSPG4-201ENST00000308508 IGLV5-52A0A0A0MRZ9 124 aa9.87□□□□□ -0.83
CSPG4-201ENST00000308508 PRLHP81277 87 aa9.87□□□□□ -0.83
CSPG4-201ENST00000308508 A0A1B0GW54 56 aa9.86□□□□□ -0.83
CSPG4-201ENST00000308508 A8MTW9 85 aa9.85□□□□□ -0.83
CSPG4-201ENST00000308508 IGKV2D-30A0A075B6S6 120 aa9.85□□□□□ -0.83
CSPG4-201ENST00000308508 IGKV2-30P06310 120 aa9.85□□□□□ -0.83
CSPG4-201ENST00000308508 ODF3L2Q3SX64 289 aa9.85□□□□□ -0.83
CSPG4-201ENST00000308508 Q8N2B8 174 aa9.85□□□□□ -0.83
CSPG4-201ENST00000308508 H3BPC8 53 aa9.84□□□□□ -0.83
CSPG4-201ENST00000308508 C6orf48Q9UBA6 75 aa9.84□□□□□ -0.83
CSPG4-201ENST00000308508 PLA2G2AP14555 144 aa9.83□□□□□ -0.84
CSPG4-201ENST00000308508 COL4A4P53420 1690 aaPredicted RBP9.83□□□□□ -0.84
CSPG4-201ENST00000308508 SPATA3Q8NHX4 192 aa9.83□□□□□ -0.84
CSPG4-201ENST00000308508 SPINT4Q6UDR6 99 aa9.82□□□□□ -0.84
CSPG4-201ENST00000308508 ATP11AUNQ6ZP68 121 aa9.82□□□□□ -0.84
CSPG4-201ENST00000308508 LY6G6DO95868 133 aa9.82□□□□□ -0.84
CSPG4-201ENST00000308508 LINC01546A6NGU7 62 aa9.81□□□□□ -0.84
CSPG4-201ENST00000308508 KIAA0087Q14695 138 aa9.79□□□□□ -0.84
CSPG4-201ENST00000308508 IGLV1-51P01701 117 aa9.79□□□□□ -0.84
CSPG4-201ENST00000308508 LRRK2Q5S007 2527 aa9.79□□□□□ -0.84
CSPG4-201ENST00000308508 NAV2Q8IVL1 2488 aa9.79□□□□□ -0.84
CSPG4-201ENST00000308508 TTC28Q96AY4 2481 aa9.78□□□□□ -0.84
CSPG4-201ENST00000308508 EDN2P20800 178 aa9.78□□□□□ -0.84
CSPG4-201ENST00000308508 BRI3O95415 125 aa9.78□□□□□ -0.84
CSPG4-201ENST00000308508 Q6ZSN1 163 aa9.78□□□□□ -0.84
CSPG4-201ENST00000308508 IGLV5-39A0A0G2JS06 123 aa9.77□□□□□ -0.85
CSPG4-201ENST00000308508 MUC22E2RYF6 1773 aaPredicted RBP9.77□□□□□ -0.85
CSPG4-201ENST00000308508 Q6ZRU5 148 aa9.76□□□□□ -0.85
CSPG4-201ENST00000308508 SMCR5Q8TEV8 140 aa9.76□□□□□ -0.85
CSPG4-201ENST00000308508 LYPD5Q6UWN5 251 aa9.75□□□□□ -0.85
CSPG4-201ENST00000308508 LOC110117498A0A087WWA1 95 aa9.75□□□□□ -0.85
CSPG4-201ENST00000308508 C11orf72Q8NBR9 251 aa9.75□□□□□ -0.85
CSPG4-201ENST00000308508 C22orf24Q9Y442 160 aa9.74□□□□□ -0.85
CSPG4-201ENST00000308508 TRAV22A0A0B4J277 110 aa9.74□□□□□ -0.85
CSPG4-201ENST00000308508 SMCPP49901 116 aaPredicted RBP9.74□□□□□ -0.85
CSPG4-201ENST00000308508 FSHBP01225 129 aa9.73□□□□□ -0.85
CSPG4-201ENST00000308508 PLA2G1BP04054 148 aaKnown RBP9.73□□□□□ -0.85
CSPG4-201ENST00000308508 Q6ZQT0 140 aa9.72□□□□□ -0.85
CSPG4-201ENST00000308508 PRO0461Q9UI25 63 aa9.72□□□□□ -0.85
CSPG4-201ENST00000308508 WDR87Q6ZQQ6 2873 aa9.72□□□□□ -0.85
CSPG4-201ENST00000308508 PIEZO2Q9H5I5 2752 aa9.72□□□□□ -0.85
CSPG4-201ENST00000308508 FN1P02751 2386 aaKnown RBP9.71□□□□□ -0.86
CSPG4-201ENST00000308508 CYP4F30PQ9H0H9 118 aa9.7□□□□□ -0.86
CSPG4-201ENST00000308508 COL27A1Q8IZC6 1860 aaPredicted RBP9.7□□□□□ -0.86
CSPG4-201ENST00000308508 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms