RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 SYS1-DBNDD2H3BUS1 97 aa14.33□□□□□ -0.12
HOXD4-201ENST00000306324 HSPG2P98160 4391 aa14.32□□□□□ -0.12
HOXD4-201ENST00000306324 PLNP26678 52 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 XGP55808 180 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 C6orf48Q9UBA6 75 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 IGLV5-39A0A0G2JS06 123 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 DPM2O94777 84 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 CHTF8P0CG12 524 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 RNF151Q2KHN1 245 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 PKIGQ9Y2B9 76 aa14.31□□□□□ -0.12
HOXD4-201ENST00000306324 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.31□□□□□ -0.12
HOXD4-201ENST00000306324 IGKV2-24A0A0C4DH68 120 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 LOC107984640A0A0U1RRK4 108 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 TMEM223A0PJW6 202 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 C3orf79P0CE67 100 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 S100A2P29034 98 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 KRTDAPP60985 99 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 HIST3H2BBQ8N257 126 aa14.3□□□□□ -0.12
HOXD4-201ENST00000306324 PANO1I0J062 215 aa14.29□□□□□ -0.12
HOXD4-201ENST00000306324 IGKCP01834 107 aa14.29□□□□□ -0.12
HOXD4-201ENST00000306324 CXCL5P42830 114 aa14.29□□□□□ -0.12
HOXD4-201ENST00000306324 A0A096LNI7 61 aa14.28□□□□□ -0.12
HOXD4-201ENST00000306324 TRBV30A0A0K0K1B3 111 aa14.28□□□□□ -0.12
HOXD4-201ENST00000306324 PET117Q6UWS5 81 aa14.28□□□□□ -0.12
HOXD4-201ENST00000306324 DPH3Q96FX2 82 aa14.28□□□□□ -0.12
HOXD4-201ENST00000306324 SNRPEP62304 92 aaKnown RBP14.27□□□□□ -0.12
HOXD4-201ENST00000306324 RPL18AQ02543 176 aaKnown RBP14.27□□□□□ -0.12
HOXD4-201ENST00000306324 GAGE2BQ13066 116 aa14.26□□□□□ -0.13
HOXD4-201ENST00000306324 C9orf116Q5BN46 136 aaPredicted RBP14.26□□□□□ -0.13
HOXD4-201ENST00000306324 SCXQ7RTU7 201 aa14.26□□□□□ -0.13
HOXD4-201ENST00000306324 MAJINQ3KP22 176 aa14.25□□□□□ -0.13
HOXD4-201ENST00000306324 LINC01545Q5VT33 79 aa14.25□□□□□ -0.13
HOXD4-201ENST00000306324 SPACA4Q8TDM5 124 aa14.25□□□□□ -0.13
HOXD4-201ENST00000306324 HIST1H2BLQ99880 126 aa14.25□□□□□ -0.13
HOXD4-201ENST00000306324 CIRBPQ14011 172 aaKnown RBP14.24□□□□□ -0.13
HOXD4-201ENST00000306324 CIRBP-AS1Q8TBR5 109 aa14.24□□□□□ -0.13
HOXD4-201ENST00000306324 PTTG1IPP53801 180 aa14.23□□□□□ -0.13
HOXD4-201ENST00000306324 LINC00474Q9P2X8 69 aa14.22□□□□□ -0.13
HOXD4-201ENST00000306324 HERC2O95714 4834 aa14.22□□□□□ -0.13
HOXD4-201ENST00000306324 TLX1NBP0CAT3 122 aa14.21□□□□□ -0.13
HOXD4-201ENST00000306324 HERVK_113P61574 105 aa14.21□□□□□ -0.13
HOXD4-201ENST00000306324 Q6ZRP5 223 aa14.21□□□□□ -0.13
HOXD4-201ENST00000306324 C5orf52A6NGY3 159 aa14.2□□□□□ -0.14
HOXD4-201ENST00000306324 NDUFC2-KCTD14E9PQ53 114 aa14.2□□□□□ -0.14
HOXD4-201ENST00000306324 A0A087WYN8 130 aa14.19□□□□□ -0.14
HOXD4-201ENST00000306324 C20orf202A1L168 122 aa14.19□□□□□ -0.14
HOXD4-201ENST00000306324 GAGE2EQ4V326 116 aa14.19□□□□□ -0.14
HOXD4-201ENST00000306324 GAGE2DQ9UEU5 116 aa14.19□□□□□ -0.14
HOXD4-201ENST00000306324 SMR3BP02814 79 aaPredicted RBP14.18□□□□□ -0.14
HOXD4-201ENST00000306324 STPG4Q8N801 248 aa14.18□□□□□ -0.14
HOXD4-201ENST00000306324 ZNF625Q96I27 306 aaPredicted RBP14.18□□□□□ -0.14
HOXD4-201ENST00000306324 SFTA2Q6UW10 78 aa14.17□□□□□ -0.14
HOXD4-201ENST00000306324 LEPROTO15243 131 aa14.16□□□□□ -0.14
HOXD4-201ENST00000306324 FAT1Q14517 4588 aa14.16□□□□□ -0.14
HOXD4-201ENST00000306324 PLEKHB2Q96CS7 222 aa14.15□□□□□ -0.14
HOXD4-201ENST00000306324 PLAC8Q9NZF1 115 aa14.14□□□□□ -0.15
HOXD4-201ENST00000306324 TMA7Q9Y2S6 64 aaKnown RBP14.14□□□□□ -0.15
HOXD4-201ENST00000306324 PFN2P35080 140 aa14.13□□□□□ -0.15
HOXD4-201ENST00000306324 TSPEAR-AS2P59090 65 aa14.13□□□□□ -0.15
HOXD4-201ENST00000306324 NDUFA12Q9UI09 145 aa14.13□□□□□ -0.15
HOXD4-201ENST00000306324 J3QQQ9 107 aa14.12□□□□□ -0.15
HOXD4-201ENST00000306324 ERG28Q9UKR5 140 aa14.12□□□□□ -0.15
HOXD4-201ENST00000306324 LGALS3P17931 250 aaKnown RBP14.12□□□□□ -0.15
HOXD4-201ENST00000306324 ATOH7Q8N100 152 aa14.12□□□□□ -0.15
HOXD4-201ENST00000306324 E9PLD3 99 aa14.11□□□□□ -0.15
HOXD4-201ENST00000306324 KRTAP17-1Q9BYP8 105 aa14.11□□□□□ -0.15
HOXD4-201ENST00000306324 XAGE1AQ9HD64 81 aa14.11□□□□□ -0.15
HOXD4-201ENST00000306324 MYMXA0A1B0GTQ4 84 aa14.1□□□□□ -0.15
HOXD4-201ENST00000306324 Q8N1X5 172 aa14.1□□□□□ -0.15
HOXD4-201ENST00000306324 A0A1W2PNN7 141 aa14.09□□□□□ -0.15
HOXD4-201ENST00000306324 AKR1D1P51857 326 aa14.09□□□□□ -0.15
HOXD4-201ENST00000306324 C9orf129Q5T035 196 aaKnown RBP14.09□□□□□ -0.15
HOXD4-201ENST00000306324 LINC00528Q8N1L1 170 aa14.09□□□□□ -0.15
HOXD4-201ENST00000306324 FAM168BA1KXE4 195 aa14.08□□□□□ -0.16
HOXD4-201ENST00000306324 HERV-K104P63124 156 aa14.08□□□□□ -0.16
HOXD4-201ENST00000306324 COX17Q14061 63 aa14.07□□□□□ -0.16
HOXD4-201ENST00000306324 FAM229AH3BQW9 127 aa14.06□□□□□ -0.16
HOXD4-201ENST00000306324 MEIG1Q5JSS6 88 aa14.06□□□□□ -0.16
HOXD4-201ENST00000306324 A0A0U1RRA0 63 aa14.06□□□□□ -0.16
HOXD4-201ENST00000306324 NMUP48645 174 aa14.06□□□□□ -0.16
HOXD4-201ENST00000306324 LINC00158P58513 81 aa14.06□□□□□ -0.16
HOXD4-201ENST00000306324 FAM19A5Q7Z5A7 132 aaPredicted RBP14.06□□□□□ -0.16
HOXD4-201ENST00000306324 Q5VSD8 79 aa14.05□□□□□ -0.16
HOXD4-201ENST00000306324 EPM2AB3EWF7 344 aa14.04□□□□□ -0.16
HOXD4-201ENST00000306324 SCGB1D1O95968 90 aa14.04□□□□□ -0.16
HOXD4-201ENST00000306324 IGKV2D-26A0A0A0MRZ7 120 aa14.03□□□□□ -0.16
HOXD4-201ENST00000306324 SMIM13P0DJ93 91 aa14.03□□□□□ -0.16
HOXD4-201ENST00000306324 VPS13BQ7Z7G8 4022 aa14.01□□□□□ -0.17
HOXD4-201ENST00000306324 ANKRD39Q53RE8 183 aa14.01□□□□□ -0.17
HOXD4-201ENST00000306324 C7orf33Q8WU49 177 aa14.01□□□□□ -0.17
HOXD4-201ENST00000306324 SND1-IT1Q9HBX3 110 aa14.01□□□□□ -0.17
HOXD4-201ENST00000306324 LINC00587B1AMM8 73 aa14□□□□□ -0.17
HOXD4-201ENST00000306324 KRTAP7-1Q8IUC3 87 aa14□□□□□ -0.17
HOXD4-201ENST00000306324 SERTAD4-AS1Q5TG53 156 aa13.99□□□□□ -0.17
HOXD4-201ENST00000306324 PHF5AQ7RTV0 110 aaKnown RBP13.99□□□□□ -0.17
HOXD4-201ENST00000306324 KRTAP4-5Q9BYR2 181 aa13.99□□□□□ -0.17
HOXD4-201ENST00000306324 TTTY13Q9BZ97 58 aa13.99□□□□□ -0.17
HOXD4-201ENST00000306324 M0QXV9 152 aa13.98□□□□□ -0.17
HOXD4-201ENST00000306324 SRRM2Q9UQ35 2752 aaKnown RBP13.97□□□□□ -0.17
HOXD4-201ENST00000306324 ZNF815PA8K554 130 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms