RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 IGKV4-1P06312 121 aa7.77□□□□□ -1.17
CD44-201ENST00000263398 DHRS4-AS1Q9P1J3 65 aa7.77□□□□□ -1.17
CD44-201ENST00000263398 C3orf84H3BNL1 204 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 AGRNO00468 2067 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 ZNF73O43830 326 aaPredicted RBP7.76□□□□□ -1.17
CD44-201ENST00000263398 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.76□□□□□ -1.17
CD44-201ENST00000263398 BRK1Q8WUW1 75 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 CLUHP3Q96NS8 147 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 FREM2Q5SZK8 3169 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 NDUFC1O43677 76 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 CYSRT1A8MQ03 144 aa7.76□□□□□ -1.17
CD44-201ENST00000263398 RPL28P46779 137 aaKnown RBP7.76□□□□□ -1.17
CD44-201ENST00000263398 IGLV1-51P01701 117 aa7.75□□□□□ -1.17
CD44-201ENST00000263398 Q6JHZ5 121 aa7.75□□□□□ -1.17
CD44-201ENST00000263398 FAM19A3Q7Z5A8 133 aa7.75□□□□□ -1.17
CD44-201ENST00000263398 ACANP16112 2415 aa7.75□□□□□ -1.17
CD44-201ENST00000263398 ADAMTS20P59510 1910 aa7.74□□□□□ -1.17
CD44-201ENST00000263398 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.74□□□□□ -1.17
CD44-201ENST00000263398 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.74□□□□□ -1.17
CD44-201ENST00000263398 MAP1AP78559 2803 aaPredicted RBP7.74□□□□□ -1.17
CD44-201ENST00000263398 CCDC179H3BU77 68 aa7.74□□□□□ -1.17
CD44-201ENST00000263398 BEAN1Q3B7T3 259 aa7.74□□□□□ -1.17
CD44-201ENST00000263398 NTM-AS1Q6ZSK4 140 aa7.74□□□□□ -1.17
CD44-201ENST00000263398 LINC00694P0DN24 101 aa7.74□□□□□ -1.17
CD44-201ENST00000263398 ZNF292O60281 2723 aa7.73□□□□□ -1.17
CD44-201ENST00000263398 ADAMTSL4-AS1Q5T5F5 129 aa7.73□□□□□ -1.17
CD44-201ENST00000263398 UNQ6190/PRO20217Q6UXQ8 127 aa7.73□□□□□ -1.17
CD44-201ENST00000263398 DSPP15924 2871 aaKnown RBP7.73□□□□□ -1.17
CD44-201ENST00000263398 COX6A2Q02221 97 aa7.73□□□□□ -1.17
CD44-201ENST00000263398 ATP5EP56381 51 aaPredicted RBP7.73□□□□□ -1.17
CD44-201ENST00000263398 RAI1Q7Z5J4 1906 aaPredicted RBP7.72□□□□□ -1.17
CD44-201ENST00000263398 IGLV4-60A0A075B6I1 120 aa7.72□□□□□ -1.17
CD44-201ENST00000263398 NDUFC2-KCTD14E9PQ53 114 aa7.72□□□□□ -1.17
CD44-201ENST00000263398 PCSK5Q92824 1860 aa7.72□□□□□ -1.17
CD44-201ENST00000263398 MPLKIPQ8TAP9 179 aa7.72□□□□□ -1.17
CD44-201ENST00000263398 EGFEM1PQ0D2K5 195 aa7.71□□□□□ -1.17
CD44-201ENST00000263398 IGHV4-30-4P0DP06 118 aa7.71□□□□□ -1.17
CD44-201ENST00000263398 KRTAP10-9P60411 292 aa7.71□□□□□ -1.17
CD44-201ENST00000263398 WFDC10BQ8IUB3 73 aa7.71□□□□□ -1.18
CD44-201ENST00000263398 BOD1L1Q8NFC6 3051 aa7.71□□□□□ -1.18
CD44-201ENST00000263398 TET2Q6N021 2002 aaPredicted RBP7.7□□□□□ -1.18
CD44-201ENST00000263398 LOC107984640A0A0U1RRK4 108 aa7.7□□□□□ -1.18
CD44-201ENST00000263398 FHL2Q14192 279 aa7.7□□□□□ -1.18
CD44-201ENST00000263398 KIF25-AS1Q9Y6Z4 181 aa7.7□□□□□ -1.18
CD44-201ENST00000263398 Q8N814 137 aa7.7□□□□□ -1.18
CD44-201ENST00000263398 SNURFQ9Y675 71 aa7.7□□□□□ -1.18
CD44-201ENST00000263398 Q6ZSN1 163 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 RPL37AP8A6NKH3 93 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 SEC61GP60059 68 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 C9orf116Q5BN46 136 aaPredicted RBP7.68□□□□□ -1.18
CD44-201ENST00000263398 OXLD1Q5BKU9 147 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 WFDC13Q8IUB5 93 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 TRBV10-3A0A0K0K1G6 114 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 PPDPFQ9H3Y8 114 aa7.68□□□□□ -1.18
CD44-201ENST00000263398 USP34Q70CQ2 3546 aa7.67□□□□□ -1.18
CD44-201ENST00000263398 A0A1B0GUV1 79 aa7.67□□□□□ -1.18
CD44-201ENST00000263398 AKAP13Q12802 2813 aa7.67□□□□□ -1.18
CD44-201ENST00000263398 A0A087WYN8 130 aa7.66□□□□□ -1.18
CD44-201ENST00000263398 ANKRD17O75179 2603 aaKnown RBP7.66□□□□□ -1.18
CD44-201ENST00000263398 NANOS2P60321 138 aaKnown RBP7.66□□□□□ -1.18
CD44-201ENST00000263398 V9GYY9 64 aa7.66□□□□□ -1.18
CD44-201ENST00000263398 LINC01546A6NGU7 62 aa7.66□□□□□ -1.18
CD44-201ENST00000263398 PRR3P79522 188 aaKnown RBP7.66□□□□□ -1.18
CD44-201ENST00000263398 SPTSSBQ8NFR3 76 aa7.66□□□□□ -1.18
CD44-201ENST00000263398 TRAV7A0A075B6U4 112 aa7.65□□□□□ -1.18
CD44-201ENST00000263398 M0QXV9 152 aa7.65□□□□□ -1.18
CD44-201ENST00000263398 CASC2Q6XLA1 102 aa7.65□□□□□ -1.18
CD44-201ENST00000263398 A0A0J9YWU9 116 aa7.65□□□□□ -1.19
CD44-201ENST00000263398 C16orf95Q9H693 158 aa7.64□□□□□ -1.19
CD44-201ENST00000263398 LRCOL1A6NCL2 159 aa7.64□□□□□ -1.19
CD44-201ENST00000263398 ZNF706Q9Y5V0 76 aaPredicted RBP7.64□□□□□ -1.19
CD44-201ENST00000263398 MUC4Q99102 2169 aa7.64□□□□□ -1.19
CD44-201ENST00000263398 A0A087WVE0 104 aa7.64□□□□□ -1.19
CD44-201ENST00000263398 FLNBO75369 2602 aaKnown RBP7.63□□□□□ -1.19
CD44-201ENST00000263398 NBEAQ8NFP9 2946 aa7.63□□□□□ -1.19
CD44-201ENST00000263398 LINC00315P59091 139 aa7.63□□□□□ -1.19
CD44-201ENST00000263398 C7orf33Q8WU49 177 aa7.63□□□□□ -1.19
CD44-201ENST00000263398 SMR3AQ99954 134 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 LINC01561Q8N1V8 128 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 SVIPQ8NHG7 77 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 FRYQ5TBA9 3013 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 C1orf137Q5JT78 98 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 LINC00474Q9P2X8 69 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 SPINK6Q6UWN8 80 aa7.62□□□□□ -1.19
CD44-201ENST00000263398 PLA2G2AP14555 144 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 MRPL55Q7Z7F7 128 aaKnown RBP7.61□□□□□ -1.19
CD44-201ENST00000263398 IGLV5-39A0A0G2JS06 123 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 PRR4Q16378 134 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 C11orf72Q8NBR9 251 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 SMIM26A0A096LP01 95 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 LINC00337Q8N6G1 96 aa7.61□□□□□ -1.19
CD44-201ENST00000263398 PLAC8L1A1L4L8 177 aa7.6□□□□□ -1.19
CD44-201ENST00000263398 Q6ZTC4 211 aa7.6□□□□□ -1.19
CD44-201ENST00000263398 Q8N9L7 120 aa7.6□□□□□ -1.19
CD44-201ENST00000263398 FAM19A4Q96LR4 140 aa7.6□□□□□ -1.19
CD44-201ENST00000263398 CELA1Q9UNI1 258 aa7.6□□□□□ -1.19
CD44-201ENST00000263398 TNRC18O15417 2968 aaPredicted RBP7.6□□□□□ -1.19
CD44-201ENST00000263398 C6orf223Q8N319 242 aa7.59□□□□□ -1.19
CD44-201ENST00000263398 Q8N3U1 123 aa7.59□□□□□ -1.19
CD44-201ENST00000263398 HECTD1Q9ULT8 2610 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms