RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 Q8N3U1 123 aa12.94□□□□□ -0.34
PDLIM4-201ENST00000253754 Q8NAQ8 132 aa12.93□□□□□ -0.34
PDLIM4-201ENST00000253754 PPDPFLQ8WWR9 84 aa12.93□□□□□ -0.34
PDLIM4-201ENST00000253754 A0A087WZ39 114 aa12.93□□□□□ -0.34
PDLIM4-201ENST00000253754 DAD1P61803 113 aa12.93□□□□□ -0.34
PDLIM4-201ENST00000253754 C11orf68Q9H3H3 251 aaKnown RBP12.92□□□□□ -0.34
PDLIM4-201ENST00000253754 COX6CP09669 75 aa12.91□□□□□ -0.34
PDLIM4-201ENST00000253754 MIR7-3HGQ8N6C7 128 aa12.91□□□□□ -0.34
PDLIM4-201ENST00000253754 CDIP1Q9H305 208 aa12.91□□□□□ -0.34
PDLIM4-201ENST00000253754 A0A1B0GUV1 79 aa12.9□□□□□ -0.35
PDLIM4-201ENST00000253754 HTN3P15516 51 aa12.9□□□□□ -0.35
PDLIM4-201ENST00000253754 TRBV10-2A0A0K0K1G8 114 aa12.88□□□□□ -0.35
PDLIM4-201ENST00000253754 NTN5Q8WTR8 489 aaPredicted RBP12.88□□□□□ -0.35
PDLIM4-201ENST00000253754 COPS9Q8WXC6 57 aa12.88□□□□□ -0.35
PDLIM4-201ENST00000253754 LST1O00453 97 aa12.88□□□□□ -0.35
PDLIM4-201ENST00000253754 LINC00158P58513 81 aa12.88□□□□□ -0.35
PDLIM4-201ENST00000253754 LINC00269Q8N2A0 174 aa12.87□□□□□ -0.35
PDLIM4-201ENST00000253754 MIFP14174 115 aa12.87□□□□□ -0.35
PDLIM4-201ENST00000253754 PFN2P35080 140 aa12.87□□□□□ -0.35
PDLIM4-201ENST00000253754 SS18Q15532 418 aa12.87□□□□□ -0.35
PDLIM4-201ENST00000253754 M0QXV9 152 aa12.86□□□□□ -0.35
PDLIM4-201ENST00000253754 PRB2P02812 416 aaPredicted RBP12.86□□□□□ -0.35
PDLIM4-201ENST00000253754 ATP5G1P05496 136 aa12.86□□□□□ -0.35
PDLIM4-201ENST00000253754 DNAH3Q8TD57 4116 aa12.85□□□□□ -0.35
PDLIM4-201ENST00000253754 TEX49A0A1B0GTD5 131 aa12.85□□□□□ -0.35
PDLIM4-201ENST00000253754 IGLV10-54A0A075B6I4 117 aa12.85□□□□□ -0.35
PDLIM4-201ENST00000253754 C2orf82Q6UX34 121 aa12.85□□□□□ -0.35
PDLIM4-201ENST00000253754 C6orf226Q5I0X4 101 aa12.84□□□□□ -0.35
PDLIM4-201ENST00000253754 IGKV2-28A0A075B6P5 120 aa12.83□□□□□ -0.35
PDLIM4-201ENST00000253754 IGKV2D-28P01615 120 aa12.83□□□□□ -0.35
PDLIM4-201ENST00000253754 SPART-AS1P0CW21 52 aa12.83□□□□□ -0.35
PDLIM4-201ENST00000253754 SND1-IT1Q9HBX3 110 aa12.83□□□□□ -0.35
PDLIM4-201ENST00000253754 ANGP03950 147 aaKnown RBP12.83□□□□□ -0.36
PDLIM4-201ENST00000253754 LINC00337Q8N6G1 96 aa12.83□□□□□ -0.36
PDLIM4-201ENST00000253754 MT-ATP8P03928 68 aa12.82□□□□□ -0.36
PDLIM4-201ENST00000253754 CCL18P55774 89 aa12.82□□□□□ -0.36
PDLIM4-201ENST00000253754 IBA57-AS1B1ANH7 110 aa12.82□□□□□ -0.36
PDLIM4-201ENST00000253754 RETNQ9HD89 108 aa12.82□□□□□ -0.36
PDLIM4-201ENST00000253754 COX7A2LO14548 114 aa12.81□□□□□ -0.36
PDLIM4-201ENST00000253754 SS18L2Q9UHA2 77 aa12.81□□□□□ -0.36
PDLIM4-201ENST00000253754 XGP55808 180 aa12.8□□□□□ -0.36
PDLIM4-201ENST00000253754 REG3AQ06141 175 aa12.8□□□□□ -0.36
PDLIM4-201ENST00000253754 LINC01600Q96MT4 127 aa12.8□□□□□ -0.36
PDLIM4-201ENST00000253754 CHCHD10Q8WYQ3 142 aaPredicted RBP12.79□□□□□ -0.36
PDLIM4-201ENST00000253754 PPDPFQ9H3Y8 114 aa12.79□□□□□ -0.36
PDLIM4-201ENST00000253754 CRPP02741 224 aa12.79□□□□□ -0.36
PDLIM4-201ENST00000253754 UBE2WQ96B02 151 aa12.78□□□□□ -0.36
PDLIM4-201ENST00000253754 FAM218AQ96MZ4 157 aa12.78□□□□□ -0.36
PDLIM4-201ENST00000253754 H3BT86 120 aa12.78□□□□□ -0.36
PDLIM4-201ENST00000253754 Q8IZM0 81 aa12.78□□□□□ -0.36
PDLIM4-201ENST00000253754 MRPL23Q16540 153 aaKnown RBP12.77□□□□□ -0.36
PDLIM4-201ENST00000253754 CD164L2Q6UWJ8 174 aa12.77□□□□□ -0.36
PDLIM4-201ENST00000253754 TRAV13-2A0A0B4J235 113 aa12.77□□□□□ -0.37
PDLIM4-201ENST00000253754 ANAPC13Q9BS18 74 aa12.76□□□□□ -0.37
PDLIM4-201ENST00000253754 TENM3Q9P273 2699 aa12.76□□□□□ -0.37
PDLIM4-201ENST00000253754 KIAA0087Q14695 138 aa12.75□□□□□ -0.37
PDLIM4-201ENST00000253754 TRAV8-4A0A0B4J246 113 aa12.73□□□□□ -0.37
PDLIM4-201ENST00000253754 LELP1Q5T871 98 aa12.73□□□□□ -0.37
PDLIM4-201ENST00000253754 MEGF8Q7Z7M0 2845 aa12.73□□□□□ -0.37
PDLIM4-201ENST00000253754 MALP21145 153 aa12.73□□□□□ -0.37
PDLIM4-201ENST00000253754 SMIM11BQ8TCY0 68 aa12.73□□□□□ -0.37
PDLIM4-201ENST00000253754 RPL28P46779 137 aaKnown RBP12.72□□□□□ -0.37
PDLIM4-201ENST00000253754 C9orf116Q5BN46 136 aaPredicted RBP12.72□□□□□ -0.37
PDLIM4-201ENST00000253754 LINC01561Q8N1V8 128 aa12.71□□□□□ -0.37
PDLIM4-201ENST00000253754 NHLRC4P0CG21 123 aaPredicted RBP12.71□□□□□ -0.38
PDLIM4-201ENST00000253754 DEFB121Q5J5C9 76 aa12.71□□□□□ -0.38
PDLIM4-201ENST00000253754 KLK12Q9UKR0 248 aa12.71□□□□□ -0.38
PDLIM4-201ENST00000253754 K7EIL1 84 aa12.7□□□□□ -0.38
PDLIM4-201ENST00000253754 Q9HAA7 133 aa12.7□□□□□ -0.38
PDLIM4-201ENST00000253754 B5MCH6 92 aa12.69□□□□□ -0.38
PDLIM4-201ENST00000253754 LINC00526Q96FQ7 95 aa12.69□□□□□ -0.38
PDLIM4-201ENST00000253754 PRR3P79522 188 aaKnown RBP12.69□□□□□ -0.38
PDLIM4-201ENST00000253754 LYPD5Q6UWN5 251 aa12.69□□□□□ -0.38
PDLIM4-201ENST00000253754 OR13C6PQ8NH95 151 aa12.69□□□□□ -0.38
PDLIM4-201ENST00000253754 TRACP01848 142 aa12.68□□□□□ -0.38
PDLIM4-201ENST00000253754 C6orf223Q8N319 242 aa12.68□□□□□ -0.38
PDLIM4-201ENST00000253754 MRAPQ8TCY5 172 aa12.68□□□□□ -0.38
PDLIM4-201ENST00000253754 A0A087WYN8 130 aa12.67□□□□□ -0.38
PDLIM4-201ENST00000253754 KPRPQ5T749 579 aaPredicted RBP12.67□□□□□ -0.38
PDLIM4-201ENST00000253754 Q6ZTC4 211 aa12.67□□□□□ -0.38
PDLIM4-201ENST00000253754 ENHOQ6UWT2 76 aa12.66□□□□□ -0.38
PDLIM4-201ENST00000253754 COL7A1Q02388 2944 aa12.66□□□□□ -0.38
PDLIM4-201ENST00000253754 C10orf25Q5T742 122 aa12.65□□□□□ -0.38
PDLIM4-201ENST00000253754 C22orf24Q9Y442 160 aa12.65□□□□□ -0.38
PDLIM4-201ENST00000253754 BAALC-AS2P0C853 105 aa12.65□□□□□ -0.38
PDLIM4-201ENST00000253754 PRR34Q9NV39 138 aa12.65□□□□□ -0.38
PDLIM4-201ENST00000253754 A0A0J9YWU9 116 aa12.64□□□□□ -0.39
PDLIM4-201ENST00000253754 CXCL5P42830 114 aa12.63□□□□□ -0.39
PDLIM4-201ENST00000253754 SPAG11BQ08648 103 aa12.63□□□□□ -0.39
PDLIM4-201ENST00000253754 UNQ6190/PRO20217Q6UXQ8 127 aa12.63□□□□□ -0.39
PDLIM4-201ENST00000253754 WFDC10BQ8IUB3 73 aa12.63□□□□□ -0.39
PDLIM4-201ENST00000253754 Q8NDZ9 215 aa12.63□□□□□ -0.39
PDLIM4-201ENST00000253754 NDUFV3P56181 108 aaKnown RBP12.6□□□□□ -0.39
PDLIM4-201ENST00000253754 COX17Q14061 63 aa12.6□□□□□ -0.39
PDLIM4-201ENST00000253754 Q6Q795 121 aa12.6□□□□□ -0.39
PDLIM4-201ENST00000253754 KLK5Q9Y337 293 aaPredicted RBP12.6□□□□□ -0.39
PDLIM4-201ENST00000253754 PRKDCP78527 4128 aaKnown RBP12.6□□□□□ -0.39
PDLIM4-201ENST00000253754 NANOS2P60321 138 aaKnown RBP12.59□□□□□ -0.39
PDLIM4-201ENST00000253754 SMIM20Q8N5G0 67 aa12.59□□□□□ -0.39
PDLIM4-201ENST00000253754 TM2D3Q9BRN9 247 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms