RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 PPP1R2P9O14990 202 aa9.34□□□□□ -0.91
PDLIM3-213ENST00000629667 SMDT1Q9H4I9 107 aa9.34□□□□□ -0.91
PDLIM3-213ENST00000629667 RIGQ13278 110 aa9.33□□□□□ -0.92
PDLIM3-213ENST00000629667 SLC51BQ86UW2 128 aa9.33□□□□□ -0.92
PDLIM3-213ENST00000629667 CARHSP1Q9Y2V2 147 aaKnown RBP9.33□□□□□ -0.92
PDLIM3-213ENST00000629667 KRTAP7-1Q8IUC3 87 aa9.32□□□□□ -0.92
PDLIM3-213ENST00000629667 TSPAN13O95857 204 aa9.31□□□□□ -0.92
PDLIM3-213ENST00000629667 RPL39P62891 51 aaKnown RBP9.31□□□□□ -0.92
PDLIM3-213ENST00000629667 IFITM10A6NMD0 228 aa9.3□□□□□ -0.92
PDLIM3-213ENST00000629667 LINC01551Q86U37 167 aa9.3□□□□□ -0.92
PDLIM3-213ENST00000629667 SMIM7Q9BQ49 75 aa9.3□□□□□ -0.92
PDLIM3-213ENST00000629667 OSTCQ9NRP0 149 aa9.3□□□□□ -0.92
PDLIM3-213ENST00000629667 TGIF2-C20orf24A0A0A6YYL0 155 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 TCAPO15273 167 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 ZNF861PO60384 105 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 HBBP68871 147 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 MRPL51Q4U2R6 128 aaKnown RBP9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 FAM104AQ969W3 186 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 C20orf78Q9BR46 151 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 SPANXA1Q9NS26 97 aa9.29□□□□□ -0.92
PDLIM3-213ENST00000629667 TRBV30A0A0K0K1B3 111 aa9.28□□□□□ -0.92
PDLIM3-213ENST00000629667 NDUFC2-KCTD14E9PQ53 114 aa9.28□□□□□ -0.92
PDLIM3-213ENST00000629667 MRPS36P82909 103 aaKnown RBP9.28□□□□□ -0.92
PDLIM3-213ENST00000629667 LCE2AQ5TA79 106 aaPredicted RBP9.28□□□□□ -0.92
PDLIM3-213ENST00000629667 LINC00862A6NCI5 91 aa9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 BLOC1S1P78537 153 aa9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 KIAA0087Q14695 138 aa9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 C9orf129Q5T035 196 aaKnown RBP9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 FAM104BQ5XKR9 115 aa9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 PACRGQ96M98 296 aaPredicted RBP9.27□□□□□ -0.93
PDLIM3-213ENST00000629667 FAT4Q6V0I7 4981 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 TRBV24-1A0A075B6N3 115 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 KRTAP9-6A0A140TA67 174 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 ZNF727A8MUV8 499 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 CKS2P33552 79 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 RPL32P62910 135 aaKnown RBP9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 NAT8BQ9UHF3 227 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 V9GYV3 84 aa9.26□□□□□ -0.93
PDLIM3-213ENST00000629667 C2orf82Q6UX34 121 aa9.25□□□□□ -0.93
PDLIM3-213ENST00000629667 SMIM2Q9BVW6 85 aa9.25□□□□□ -0.93
PDLIM3-213ENST00000629667 EIF5A2Q9GZV4 153 aaKnown RBP9.25□□□□□ -0.93
PDLIM3-213ENST00000629667 NUPR1O60356 82 aa9.24□□□□□ -0.93
PDLIM3-213ENST00000629667 TNFRSF6BO95407 300 aa9.24□□□□□ -0.93
PDLIM3-213ENST00000629667 TCTE3Q8IZS6 198 aa9.23□□□□□ -0.93
PDLIM3-213ENST00000629667 IFI27P40305 119 aaPredicted RBP9.22□□□□□ -0.93
PDLIM3-213ENST00000629667 LINC00242Q5T6M2 205 aa9.22□□□□□ -0.93
PDLIM3-213ENST00000629667 ALKAL2Q6UX46 152 aa9.22□□□□□ -0.93
PDLIM3-213ENST00000629667 TYMSOSQ8TAI1 123 aa9.22□□□□□ -0.93
PDLIM3-213ENST00000629667 A0A087X002 238 aa9.21□□□□□ -0.94
PDLIM3-213ENST00000629667 FAM74A3Q4VXF1 159 aa9.21□□□□□ -0.94
PDLIM3-213ENST00000629667 LBHQ53QV2 105 aaPredicted RBP9.21□□□□□ -0.94
PDLIM3-213ENST00000629667 CTDSP1Q9GZU7 261 aa9.21□□□□□ -0.94
PDLIM3-213ENST00000629667 C22orf24Q9Y442 160 aa9.21□□□□□ -0.94
PDLIM3-213ENST00000629667 D6R8Y8 96 aa9.2□□□□□ -0.94
PDLIM3-213ENST00000629667 CRYGAP11844 174 aa9.2□□□□□ -0.94
PDLIM3-213ENST00000629667 A0A1B0GW15 77 aa9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 NPYP01303 97 aa9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 PRSS2P07478 247 aa9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 RAB5AP20339 215 aa9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 RPL28P46779 137 aaKnown RBP9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 LINC00469Q8N7U9 141 aa9.19□□□□□ -0.94
PDLIM3-213ENST00000629667 IGLV4-3A0A075B6K6 122 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 SMIM27A0A1W2PRY6 76 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 SRP19P09132 144 aaKnown RBP9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 CKS1BP61024 79 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 LINC01561Q8N1V8 128 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 XAGE1AQ9HD64 81 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 TOMM7Q9P0U1 55 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 PYGO1Q9Y3Y4 419 aa9.18□□□□□ -0.94
PDLIM3-213ENST00000629667 F8W036 122 aa9.17□□□□□ -0.94
PDLIM3-213ENST00000629667 TEX43Q6ZNM6 134 aa9.17□□□□□ -0.94
PDLIM3-213ENST00000629667 BCE1O60756 84 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 PPBPP02775 128 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 S100A8P05109 93 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 RPL23P62829 140 aaKnown RBP9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 ADIRFQ15847 76 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 C6orf226Q5I0X4 101 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 C2orf88Q9BSF0 95 aa9.16□□□□□ -0.94
PDLIM3-213ENST00000629667 MRPL54Q6P161 138 aaKnown RBP9.15□□□□□ -0.94
PDLIM3-213ENST00000629667 Q6ZN92 141 aa9.15□□□□□ -0.94
PDLIM3-213ENST00000629667 MRPL55Q7Z7F7 128 aaKnown RBP9.15□□□□□ -0.94
PDLIM3-213ENST00000629667 RETNLBQ9BQ08 111 aa9.15□□□□□ -0.94
PDLIM3-213ENST00000629667 CDIP1Q9H305 208 aa9.15□□□□□ -0.94
PDLIM3-213ENST00000629667 TP73-AS1Q9UF72 201 aa9.14□□□□□ -0.95
PDLIM3-213ENST00000629667 MUC17Q685J3 4493 aa9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 A0A1B0GVG6 124 aa9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 Q8IZM0 81 aa9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 ORMDL3Q8N138 153 aa9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 ALKBH7Q9BT30 221 aaPredicted RBP9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 ANAPC11Q9NYG5 84 aa9.13□□□□□ -0.95
PDLIM3-213ENST00000629667 hCG_2014768A0A024R1R8 64 aa9.12□□□□□ -0.95
PDLIM3-213ENST00000629667 ZC2HC1BQ5TFG8 222 aa9.11□□□□□ -0.95
PDLIM3-213ENST00000629667 TMEM136Q6ZRR5 245 aa9.11□□□□□ -0.95
PDLIM3-213ENST00000629667 PRELID3AQ96N28 172 aa9.11□□□□□ -0.95
PDLIM3-213ENST00000629667 VCX2Q9H322 139 aa9.11□□□□□ -0.95
PDLIM3-213ENST00000629667 NAT8Q9UHE5 227 aa9.11□□□□□ -0.95
PDLIM3-213ENST00000629667 A0A1B0GXF2 115 aa9.1□□□□□ -0.95
PDLIM3-213ENST00000629667 RPL37AP8A6NKH3 93 aa9.1□□□□□ -0.95
PDLIM3-213ENST00000629667 TPRXLQ17RH7 258 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms