RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 LEPROTO15243 131 aa12.22□□□□□ -0.45
VRK3-225ENST00000601912 SIVA1O15304 175 aa12.22□□□□□ -0.45
VRK3-225ENST00000601912 PLEKHB2Q96CS7 222 aa12.22□□□□□ -0.45
VRK3-225ENST00000601912 UPK3BQ9BT76 320 aa12.22□□□□□ -0.45
VRK3-225ENST00000601912 FBN3Q75N90 2809 aa12.22□□□□□ -0.45
VRK3-225ENST00000601912 IGHV3-64A0A075B6Q5 118 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 IGHV1-58A0A0C4DH39 117 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 DLEU1O43261 78 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 SPINK8P0C7L1 97 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 XCL1P47992 114 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 BOD1L2Q8IYS8 172 aa12.21□□□□□ -0.45
VRK3-225ENST00000601912 IGHV3OR16-9A0A0B4J2B5 98 aa12.2□□□□□ -0.46
VRK3-225ENST00000601912 UBE2WQ96B02 151 aa12.2□□□□□ -0.46
VRK3-225ENST00000601912 J3QQQ9 107 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 LGALS3P17931 250 aaKnown RBP12.19□□□□□ -0.46
VRK3-225ENST00000601912 ENHOQ6UWT2 76 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 UBE2DNLQ8IWF7 75 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 CHCHD10Q8WYQ3 142 aaPredicted RBP12.19□□□□□ -0.46
VRK3-225ENST00000601912 TRAV8-3A0A0A6YYJ7 113 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 TRAV8-4A0A0B4J246 113 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
VRK3-225ENST00000601912 CD164L2Q6UWJ8 174 aa12.19□□□□□ -0.46
VRK3-225ENST00000601912 IGLV10-54A0A075B6I4 117 aa12.18□□□□□ -0.46
VRK3-225ENST00000601912 MIAQ16674 131 aa12.18□□□□□ -0.46
VRK3-225ENST00000601912 TTTY13Q9BZ97 58 aa12.18□□□□□ -0.46
VRK3-225ENST00000601912 A0A087WZ39 114 aa12.17□□□□□ -0.46
VRK3-225ENST00000601912 MYMXA0A1B0GTQ4 84 aa12.17□□□□□ -0.46
VRK3-225ENST00000601912 SMIM1B2RUZ4 78 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 C5orf38Q86SI9 138 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 MAPKAPK5-AS1Q8N8E1 139 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 Q9H8V8 135 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 TP73-AS1Q9UF72 201 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 IGLV5-39A0A0G2JS06 123 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 ZNF815PA8K554 130 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 ZFAND6Q6FIF0 208 aa12.16□□□□□ -0.46
VRK3-225ENST00000601912 TSPEAR-AS2P59090 65 aa12.15□□□□□ -0.46
VRK3-225ENST00000601912 C10orf126Q8N4M7 172 aa12.15□□□□□ -0.46
VRK3-225ENST00000601912 MUC7Q8TAX7 377 aa12.15□□□□□ -0.46
VRK3-225ENST00000601912 COX7A2LO14548 114 aa12.14□□□□□ -0.47
VRK3-225ENST00000601912 LINC01561Q8N1V8 128 aa12.14□□□□□ -0.47
VRK3-225ENST00000601912 K7EP13 123 aa12.13□□□□□ -0.47
VRK3-225ENST00000601912 WWC2-AS2Q96NR7 200 aa12.13□□□□□ -0.47
VRK3-225ENST00000601912 GAGE12HA6NDE8 117 aa12.13□□□□□ -0.47
VRK3-225ENST00000601912 MALP21145 153 aa12.12□□□□□ -0.47
VRK3-225ENST00000601912 FOXI1Q12951 378 aa12.12□□□□□ -0.47
VRK3-225ENST00000601912 SCGB1D4Q6XE38 83 aa12.12□□□□□ -0.47
VRK3-225ENST00000601912 LINC00587B1AMM8 73 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 IBA57-AS1B1ANH7 110 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 CTAG1AP78358 180 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 C2orf91Q6ZV80 131 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 C1orf43Q9BWL3 253 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 NDUFA12Q9UI09 145 aa12.11□□□□□ -0.47
VRK3-225ENST00000601912 DYNC2H1Q8NCM8 4307 aaKnown RBP12.11□□□□□ -0.47
VRK3-225ENST00000601912 HIGD1BQ9P298 99 aa12.1□□□□□ -0.47
VRK3-225ENST00000601912 COX7B2Q8TF08 81 aa12.1□□□□□ -0.47
VRK3-225ENST00000601912 TOMM7Q9P0U1 55 aa12.1□□□□□ -0.47
VRK3-225ENST00000601912 APOMO95445 188 aa12.09□□□□□ -0.47
VRK3-225ENST00000601912 DNAH7Q8WXX0 4024 aa12.08□□□□□ -0.48
VRK3-225ENST00000601912 IGKV2D-24A0A075B6R9 120 aa12.08□□□□□ -0.48
VRK3-225ENST00000601912 Q9HAA7 133 aa12.08□□□□□ -0.48
VRK3-225ENST00000601912 NDUFA1O15239 70 aa12.07□□□□□ -0.48
VRK3-225ENST00000601912 PRSS2P07478 247 aa12.07□□□□□ -0.48
VRK3-225ENST00000601912 RMI2Q96E14 147 aa12.07□□□□□ -0.48
VRK3-225ENST00000601912 C6orf226Q5I0X4 101 aa12.06□□□□□ -0.48
VRK3-225ENST00000601912 ORAOV1Q8WV07 137 aa12.06□□□□□ -0.48
VRK3-225ENST00000601912 Q8IZM0 81 aa12.05□□□□□ -0.48
VRK3-225ENST00000601912 CSMD3Q7Z407 3707 aa12.05□□□□□ -0.48
VRK3-225ENST00000601912 KRTAP26-1Q6PEX3 210 aa12.04□□□□□ -0.48
VRK3-225ENST00000601912 SFTA2Q6UW10 78 aa12.04□□□□□ -0.48
VRK3-225ENST00000601912 A0A0J9YXY3 114 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 HERV-K104P63124 156 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 TGP01266 2768 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 HSD52Q0P140 79 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 TTC32Q5I0X7 151 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 CFAP161Q6P656 301 aa12.03□□□□□ -0.48
VRK3-225ENST00000601912 ZNF625Q96I27 306 aaPredicted RBP12.03□□□□□ -0.48
VRK3-225ENST00000601912 COX11Q9Y6N1 276 aa12.02□□□□□ -0.49
VRK3-225ENST00000601912 M0R143 59 aa12.01□□□□□ -0.49
VRK3-225ENST00000601912 SRSF9Q13242 221 aaKnown RBP eCLIP12.01□□□□□ -0.49
VRK3-225ENST00000601912 TAL2Q16559 108 aa12.01□□□□□ -0.49
VRK3-225ENST00000601912 HIST1H4GQ99525 98 aa12.01□□□□□ -0.49
VRK3-225ENST00000601912 TMEM238C9JI98 176 aa12□□□□□ -0.49
VRK3-225ENST00000601912 CXCL5P42830 114 aa12□□□□□ -0.49
VRK3-225ENST00000601912 HINT1P49773 126 aaPredicted RBP12□□□□□ -0.49
VRK3-225ENST00000601912 CKS1BP61024 79 aa12□□□□□ -0.49
VRK3-225ENST00000601912 CIRBPQ14011 172 aaKnown RBP12□□□□□ -0.49
VRK3-225ENST00000601912 C3orf84H3BNL1 204 aa12□□□□□ -0.49
VRK3-225ENST00000601912 SPAG11BQ08648 103 aa12□□□□□ -0.49
VRK3-225ENST00000601912 SPANXB1Q9NS25 103 aaPredicted RBP12□□□□□ -0.49
VRK3-225ENST00000601912 KIAA0087Q14695 138 aa11.99□□□□□ -0.49
VRK3-225ENST00000601912 CASC10Q5T4H9 136 aa11.99□□□□□ -0.49
VRK3-225ENST00000601912 TM2D2Q9BX73 214 aa11.99□□□□□ -0.49
VRK3-225ENST00000601912 TENM2Q9NT68 2774 aa11.99□□□□□ -0.49
VRK3-225ENST00000601912 NBDYA0A0U1RRE5 68 aa11.98□□□□□ -0.49
VRK3-225ENST00000601912 TIMM17BO60830 172 aa11.98□□□□□ -0.49
VRK3-225ENST00000601912 BATFQ16520 125 aa11.98□□□□□ -0.49
VRK3-225ENST00000601912 MEIG1Q5JSS6 88 aa11.98□□□□□ -0.49
VRK3-225ENST00000601912 KRTAP1-5Q9BYS1 174 aa11.98□□□□□ -0.49
VRK3-225ENST00000601912 SNHG12Q9BXW3 62 aa11.97□□□□□ -0.49
VRK3-225ENST00000601912 BVES-AS1Q5T3Y7 98 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms