RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 J3QLI3 93 aa13.13□□□□□ -0.31
UPF1-210ENST00000600689 C9orf129Q5T035 196 aaKnown RBP13.13□□□□□ -0.31
UPF1-210ENST00000600689 TIMM17BO60830 172 aa13.13□□□□□ -0.31
UPF1-210ENST00000600689 Q6YL49 198 aa13.12□□□□□ -0.31
UPF1-210ENST00000600689 ZNF702PQ9H963 129 aa13.12□□□□□ -0.31
UPF1-210ENST00000600689 C14orf132Q9NPU4 83 aa13.12□□□□□ -0.31
UPF1-210ENST00000600689 Q96MF0 132 aa13.12□□□□□ -0.31
UPF1-210ENST00000600689 DEFB113Q30KQ7 82 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 LINC00643Q86TS7 51 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 HIST2H2BCQ6DN03 193 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 MIR7-3HGQ8N6C7 128 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 PFN2P35080 140 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 C11orf72Q8NBR9 251 aa13.11□□□□□ -0.31
UPF1-210ENST00000600689 FSHBP01225 129 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 SLPIP03973 132 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 LINC00158P58513 81 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 NTM-AS1Q6ZSK4 140 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 Q6ZTI0 123 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 NIPBLQ6KC79 2804 aaeCLIP13.1□□□□□ -0.316e-6■■■□□ 16.7
UPF1-210ENST00000600689 MAP6D1Q9H9H5 199 aa13.1□□□□□ -0.31
UPF1-210ENST00000600689 TMEM89A2RUT3 159 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 OR13C6PQ8NH95 151 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 A0A1W2PRX2 142 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 CRPP02741 224 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 A0A087WYN8 130 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 IGLV5-39A0A0G2JS06 123 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 DNAL4O96015 105 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 C22orf24Q9Y442 160 aa13.09□□□□□ -0.31
UPF1-210ENST00000600689 FLNAP21333 2647 aaKnown RBP13.08□□□□□ -0.32
UPF1-210ENST00000600689 LOC100131303A0A0U1RQF7 123 aa13.08□□□□□ -0.32
UPF1-210ENST00000600689 C3orf22Q8N5N4 141 aa13.08□□□□□ -0.32
UPF1-210ENST00000600689 A0A087WVE0 104 aa13.08□□□□□ -0.32
UPF1-210ENST00000600689 ACYP1P07311 99 aa13.08□□□□□ -0.32
UPF1-210ENST00000600689 LINC00337Q8N6G1 96 aa13.08□□□□□ -0.32
UPF1-210ENST00000600689 UBE2L6O14933 153 aa13.07□□□□□ -0.32
UPF1-210ENST00000600689 INSP01308 110 aa13.07□□□□□ -0.32
UPF1-210ENST00000600689 IGLV5-45A0A087WSX0 123 aa13.07□□□□□ -0.32
UPF1-210ENST00000600689 MALP21145 153 aa13.07□□□□□ -0.32
UPF1-210ENST00000600689 RPL36AP83881 106 aaKnown RBP13.07□□□□□ -0.32
UPF1-210ENST00000600689 RPL36ALQ969Q0 106 aaKnown RBP13.07□□□□□ -0.32
UPF1-210ENST00000600689 SND1-IT1Q9HBX3 110 aa13.07□□□□□ -0.32
UPF1-210ENST00000600689 BEAN1Q3B7T3 259 aa13.06□□□□□ -0.32
UPF1-210ENST00000600689 hADV29S1A0JD25 119 aa13.06□□□□□ -0.32
UPF1-210ENST00000600689 PLA2G2AP14555 144 aa13.06□□□□□ -0.32
UPF1-210ENST00000600689 KRTAP1-3Q8IUG1 177 aa13.05□□□□□ -0.32
UPF1-210ENST00000600689 TMEM126AQ9H061 195 aa13.05□□□□□ -0.32
UPF1-210ENST00000600689 TRACP01848 142 aa13.04□□□□□ -0.32
UPF1-210ENST00000600689 NOP10Q9NPE3 64 aaKnown RBP13.04□□□□□ -0.32
UPF1-210ENST00000600689 NCR3O14931 201 aa13.04□□□□□ -0.32
UPF1-210ENST00000600689 DNAJC30Q96LL9 226 aa13.04□□□□□ -0.32
UPF1-210ENST00000600689 LECT2O14960 151 aa13.03□□□□□ -0.32
UPF1-210ENST00000600689 C5orf38Q86SI9 138 aa13.03□□□□□ -0.32
UPF1-210ENST00000600689 SMIM11BQ8TCY0 68 aa13.03□□□□□ -0.32
UPF1-210ENST00000600689 CDC42SE2Q9NRR3 84 aa13.03□□□□□ -0.32
UPF1-210ENST00000600689 ACANP16112 2415 aa13.03□□□□□ -0.32
UPF1-210ENST00000600689 PAX4O43316 350 aa13.02□□□□□ -0.32
UPF1-210ENST00000600689 STHQ8IWL8 128 aa13.02□□□□□ -0.32
UPF1-210ENST00000600689 CYSTM1Q9H1C7 97 aa13.02□□□□□ -0.32
UPF1-210ENST00000600689 F5H768 121 aa13.02□□□□□ -0.33
UPF1-210ENST00000600689 WFDC11Q8NEX6 87 aa13.02□□□□□ -0.33
UPF1-210ENST00000600689 ITPR2Q14571 2701 aa13.02□□□□□ -0.33
UPF1-210ENST00000600689 UQCRQO14949 82 aa13.02□□□□□ -0.33
UPF1-210ENST00000600689 RNASE1P07998 156 aaKnown RBP13.02□□□□□ -0.33
UPF1-210ENST00000600689 IGKV2-28A0A075B6P5 120 aa13.01□□□□□ -0.33
UPF1-210ENST00000600689 IGKV2D-28P01615 120 aa13.01□□□□□ -0.33
UPF1-210ENST00000600689 IMUPQ9GZP8 106 aa13.01□□□□□ -0.33
UPF1-210ENST00000600689 K7EQD1 137 aa13.01□□□□□ -0.33
UPF1-210ENST00000600689 INAFM2P0DMQ5 153 aa13□□□□□ -0.33
UPF1-210ENST00000600689 C1orf158Q8N1D5 194 aa13□□□□□ -0.33
UPF1-210ENST00000600689 PEMTQ9UBM1 199 aa13□□□□□ -0.33
UPF1-210ENST00000600689 TRGV2A0A075B6R0 118 aa13□□□□□ -0.33
UPF1-210ENST00000600689 COPS9Q8WXC6 57 aa13□□□□□ -0.33
UPF1-210ENST00000600689 A0A1B0GX51 115 aa12.99□□□□□ -0.33
UPF1-210ENST00000600689 COX7B2Q8TF08 81 aa12.99□□□□□ -0.33
UPF1-210ENST00000600689 LINC00846Q9NV44 126 aa12.99□□□□□ -0.33
UPF1-210ENST00000600689 TRAV13-2A0A0B4J235 113 aa12.98□□□□□ -0.33
UPF1-210ENST00000600689 HIST1H4AP62805 103 aaKnown RBP12.98□□□□□ -0.33
UPF1-210ENST00000600689 WFDC10AQ9H1F0 79 aa12.98□□□□□ -0.33
UPF1-210ENST00000600689 PDZD2O15018 2839 aa12.98□□□□□ -0.33
UPF1-210ENST00000600689 WFDC9Q8NEX5 89 aa12.98□□□□□ -0.33
UPF1-210ENST00000600689 TMEM243Q9BU79 118 aa12.98□□□□□ -0.33
UPF1-210ENST00000600689 CLPSL2Q6UWE3 100 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 CCL18P55774 89 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 ODF3L2Q3SX64 289 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 LRRC75A-AS1Q8N1F1 130 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 LINC00526Q96FQ7 95 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 IGLV4-60A0A075B6I1 120 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 COX7CP15954 63 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 DEFB114Q30KQ6 69 aa12.97□□□□□ -0.33
UPF1-210ENST00000600689 RPL35AP18077 110 aaKnown RBP12.96□□□□□ -0.33
UPF1-210ENST00000600689 MTORP42345 2549 aa12.96□□□□□ -0.33
UPF1-210ENST00000600689 RNF152Q8N8N0 203 aa12.96□□□□□ -0.34
UPF1-210ENST00000600689 PRR3P79522 188 aaKnown RBP12.95□□□□□ -0.34
UPF1-210ENST00000600689 HELZ2Q9BYK8 2649 aaKnown RBP12.95□□□□□ -0.34
UPF1-210ENST00000600689 NBEAL2Q6ZNJ1 2754 aa12.95□□□□□ -0.34
UPF1-210ENST00000600689 RPL28P46779 137 aaKnown RBP12.94□□□□□ -0.34
UPF1-210ENST00000600689 KIR2DL5BQ8NHK3 375 aa12.94□□□□□ -0.34
UPF1-210ENST00000600689 TRGV4A0A0C4DH28 118 aa12.92□□□□□ -0.34
UPF1-210ENST00000600689 C2orf48Q96LS8 159 aa12.92□□□□□ -0.34
UPF1-210ENST00000600689 SETXQ7Z333 2677 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms