RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MYOZ3Q8TDC0 251 aa-0.35□□□□□ -2.47
SMCHD1-204ENST00000581226 SPRR4Q96PI1 79 aa-0.35□□□□□ -2.47
SMCHD1-204ENST00000581226 MAP1AP78559 2803 aaPredicted RBP-0.35□□□□□ -2.47
SMCHD1-204ENST00000581226 CHKB-CPT1BH3BT56 60 aa-0.36□□□□□ -2.47
SMCHD1-204ENST00000581226 SFT2D2O95562 160 aa-0.36□□□□□ -2.47
SMCHD1-204ENST00000581226 SPRR2DP22532 72 aa-0.36□□□□□ -2.47
SMCHD1-204ENST00000581226 TPPP2P59282 170 aa-0.36□□□□□ -2.47
SMCHD1-204ENST00000581226 SPHKAPQ2M3C7 1700 aa-0.37□□□□□ -2.47
SMCHD1-204ENST00000581226 UBE2L5PA0A1B0GUS4 154 aa-0.37□□□□□ -2.47
SMCHD1-204ENST00000581226 LINC00587B1AMM8 73 aa-0.37□□□□□ -2.47
SMCHD1-204ENST00000581226 UBE2L3P68036 154 aaKnown RBP-0.37□□□□□ -2.47
SMCHD1-204ENST00000581226 CC2D2AQ9P2K1 1620 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 CHD1O14646 1710 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 C2orf88Q9BSF0 95 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 IER3IP1Q9Y5U9 82 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 COL4A6Q14031 1691 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 URB1O60287 2271 aaKnown RBP-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 TULP4Q9NRJ4 1543 aa-0.38□□□□□ -2.47
SMCHD1-204ENST00000581226 CHD8Q9HCK8 2581 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 TRBV6-1A0A0K0K1D8 114 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 CORTO00230 105 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 SNAPC5O75971 98 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 APOC3P02656 99 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 IGLC1P0CG04 106 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 EHBP1L1Q8N3D4 1523 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 ARHGEF12Q9NZN5 1544 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 SCAPERQ9BY12 1400 aa-0.39□□□□□ -2.47
SMCHD1-204ENST00000581226 NRKQ7Z2Y5 1582 aa-0.4□□□□□ -2.47
SMCHD1-204ENST00000581226 PZPP20742 1482 aa-0.4□□□□□ -2.47
SMCHD1-204ENST00000581226 LOC285095A0A1B0GVY8 99 aa-0.4□□□□□ -2.47
SMCHD1-204ENST00000581226 FAM167A-AS1Q96KT0 104 aa-0.4□□□□□ -2.47
SMCHD1-204ENST00000581226 COL6A3P12111 3177 aa-0.41□□□□□ -2.47
SMCHD1-204ENST00000581226 NUP188Q5SRE5 1749 aa-0.41□□□□□ -2.47
SMCHD1-204ENST00000581226 FAM223AQ8IWN6 122 aa-0.41□□□□□ -2.48
SMCHD1-204ENST00000581226 DEFB123Q8N688 67 aa-0.41□□□□□ -2.48
SMCHD1-204ENST00000581226 NXT2Q9NPJ8 142 aaKnown RBP-0.41□□□□□ -2.48
SMCHD1-204ENST00000581226 EIF4G3O43432 1585 aaKnown RBP-0.41□□□□□ -2.48
SMCHD1-204ENST00000581226 MUC2Q02817 5179 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 APC2O95996 2303 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 F6UZH7 168 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 UBE2D3P61077 147 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 UBE2D2P62837 147 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 DIP2CQ9Y2E4 1556 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 SHANK2Q9UPX8 1470 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 TOP2BQ02880 1626 aa-0.42□□□□□ -2.48
SMCHD1-204ENST00000581226 ABCA3Q99758 1704 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 S100A3P33764 101 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 GNG11P61952 73 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 DCDP81605 110 aaKnown RBP-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 Q0VG73 95 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 C10orf113Q5VZT2 155 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 TMEM263Q8WUH6 116 aaKnown RBP-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 ARL2-SNX15V9GYD0 113 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 ADGRL2O95490 1459 aa-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 MAGI1Q96QZ7 1491 aaPredicted RBP-0.43□□□□□ -2.48
SMCHD1-204ENST00000581226 FXYD6-FXYD2A0A087WZ82 144 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 MGPP08493 103 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 SPRR1BP22528 89 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 GNG4P50150 75 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 ATP5EP56381 51 aaPredicted RBP-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 PPP3R1P63098 170 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 SARNPP82979 210 aaKnown RBP-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 PIGYQ3MUY2 71 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 TOPAZ1Q8N9V7 1692 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 EP300Q09472 2414 aaPredicted RBP-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 ARHGAP5Q13017 1502 aa-0.44□□□□□ -2.48
SMCHD1-204ENST00000581226 PDCD11Q14690 1871 aaKnown RBP-0.45□□□□□ -2.48
SMCHD1-204ENST00000581226 MRC2Q9UBG0 1479 aa-0.45□□□□□ -2.48
SMCHD1-204ENST00000581226 LINC00959A0A1B0GUT2 108 aa-0.45□□□□□ -2.48
SMCHD1-204ENST00000581226 FAM24AA6NFZ4 105 aa-0.45□□□□□ -2.48
SMCHD1-204ENST00000581226 UQCR10Q9UDW1 63 aa-0.45□□□□□ -2.48
SMCHD1-204ENST00000581226 FLNBO75369 2602 aaKnown RBP-0.46□□□□□ -2.48
SMCHD1-204ENST00000581226 DNAJC13O75165 2243 aa-0.46□□□□□ -2.48
SMCHD1-204ENST00000581226 SFTA2Q6UW10 78 aa-0.46□□□□□ -2.48
SMCHD1-204ENST00000581226 LCN9Q8WX39 176 aa-0.46□□□□□ -2.48
SMCHD1-204ENST00000581226 MAPKBP1O60336 1514 aa-0.47□□□□□ -2.48
SMCHD1-204ENST00000581226 S100A1P23297 94 aa-0.47□□□□□ -2.48
SMCHD1-204ENST00000581226 MANBALQ9NQG1 85 aa-0.47□□□□□ -2.48
SMCHD1-204ENST00000581226 GAPVD1Q14C86 1478 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 C1orf167Q5SNV9 1468 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 WDR7Q9Y4E6 1490 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 SVBPQ8N300 66 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 PAPPA2Q9BXP8 1791 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 LRP1BQ9NZR2 4599 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 NCOA3Q9Y6Q9 1424 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 ACANP16112 2415 aa-0.48□□□□□ -2.49
SMCHD1-204ENST00000581226 KIAA0556O60303 1618 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 SRRM2Q9UQ35 2752 aaKnown RBP-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 XRN1Q8IZH2 1706 aaKnown RBP-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 FAM223BA6NKX1 122 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 K7EQZ3 153 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 COX6B1P14854 86 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 LINC01600Q96MT4 127 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 GNG8Q9UK08 70 aa-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 POLA1P09884 1462 aaPredicted RBP-0.49□□□□□ -2.49
SMCHD1-204ENST00000581226 MARF1Q9Y4F3 1742 aaKnown RBP-0.5□□□□□ -2.49
SMCHD1-204ENST00000581226 ANKRD36A6QL64 1941 aa-0.5□□□□□ -2.49
SMCHD1-204ENST00000581226 KRTAP6-1Q3LI64 71 aa-0.5□□□□□ -2.49
SMCHD1-204ENST00000581226 FMN2Q9NZ56 1722 aa-0.5□□□□□ -2.49
SMCHD1-204ENST00000581226 ABCC5O15440 1437 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms