RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 S100PP25815 95 aa9.54□□□□□ -0.88
VPS39-210ENST00000568357 IFI27P40305 119 aaPredicted RBP9.54□□□□□ -0.88
VPS39-210ENST00000568357 RPS10P5Q9NQ39 176 aa9.54□□□□□ -0.88
VPS39-210ENST00000568357 LRP1Q07954 4544 aaKnown RBP9.54□□□□□ -0.88
VPS39-210ENST00000568357 IFITM10A6NMD0 228 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 SYCNQ0VAF6 134 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 C2orf66Q6UXQ4 117 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 CARD19Q96LW7 228 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 GNB1LQ9BYB4 327 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
VPS39-210ENST00000568357 NXT2Q9NPJ8 142 aaKnown RBP9.53□□□□□ -0.88
VPS39-210ENST00000568357 IGKV2-24A0A0C4DH68 120 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 RHEBQ15382 184 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 ORMDL2Q53FV1 153 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 ZC2HC1BQ5TFG8 222 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 SERTAD4-AS1Q5TG53 156 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 CYSLTR1Q9Y271 337 aa9.52□□□□□ -0.89
VPS39-210ENST00000568357 A0A096LNI7 61 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 KRTAP29-1A8MX34 341 aaPredicted RBP9.51□□□□□ -0.89
VPS39-210ENST00000568357 K7EMI3 77 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 MAJINQ3KP22 176 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 Q6ZRU5 148 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 TMEM141Q96I45 108 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 PLAC8Q9NZF1 115 aa9.51□□□□□ -0.89
VPS39-210ENST00000568357 FAT3Q8TDW7 4589 aa9.5□□□□□ -0.89
VPS39-210ENST00000568357 IGIPA6NJ69 53 aa9.5□□□□□ -0.89
VPS39-210ENST00000568357 APOMO95445 188 aa9.5□□□□□ -0.89
VPS39-210ENST00000568357 RPL37AP61513 92 aaKnown RBP9.5□□□□□ -0.89
VPS39-210ENST00000568357 LINC00242Q5T6M2 205 aa9.5□□□□□ -0.89
VPS39-210ENST00000568357 ALKBH7Q9BT30 221 aaPredicted RBP9.5□□□□□ -0.89
VPS39-210ENST00000568357 PLA2G2DQ9UNK4 145 aa9.5□□□□□ -0.89
VPS39-210ENST00000568357 LINC00173Q6ZV60 143 aa9.49□□□□□ -0.89
VPS39-210ENST00000568357 C2orf48Q96LS8 159 aa9.49□□□□□ -0.89
VPS39-210ENST00000568357 CAMK2N2Q96S95 79 aa9.49□□□□□ -0.89
VPS39-210ENST00000568357 APOC3P02656 99 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 UBE2D1P51668 147 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 SPAG11BQ08648 103 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 TEX43Q6ZNM6 134 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 STPG4Q8N801 248 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 ORAOV1Q8WV07 137 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 AMELXQ99217 191 aa9.48□□□□□ -0.89
VPS39-210ENST00000568357 MRPL18Q9H0U6 180 aaKnown RBP9.48□□□□□ -0.89
VPS39-210ENST00000568357 TGIF2-C20orf24A0A0A6YYL0 155 aa9.47□□□□□ -0.89
VPS39-210ENST00000568357 HNRNPA3P51991 378 aaKnown RBP9.47□□□□□ -0.89
VPS39-210ENST00000568357 FABP9Q0Z7S8 132 aa9.47□□□□□ -0.89
VPS39-210ENST00000568357 COX19Q49B96 90 aa9.47□□□□□ -0.89
VPS39-210ENST00000568357 OR10D4PQ8NGN7 298 aa9.47□□□□□ -0.89
VPS39-210ENST00000568357 VCX2Q9H322 139 aa9.47□□□□□ -0.89
VPS39-210ENST00000568357 A0A087WZ39 114 aa9.46□□□□□ -0.9
VPS39-210ENST00000568357 NPSP0C0P6 89 aa9.46□□□□□ -0.9
VPS39-210ENST00000568357 Q6ZN92 141 aa9.46□□□□□ -0.9
VPS39-210ENST00000568357 TOMM6Q96B49 74 aa9.46□□□□□ -0.9
VPS39-210ENST00000568357 A0A0J9YXV3 536 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 LINC01546A6NGU7 62 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 MT-ND6P03923 174 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 G0S2P27469 103 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 GAGE2BQ13066 116 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 C10orf25Q5T742 122 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 C2orf88Q9BSF0 95 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 LINC00474Q9P2X8 69 aa9.45□□□□□ -0.9
VPS39-210ENST00000568357 LOC107984640A0A0U1RRK4 108 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.44□□□□□ -0.9
VPS39-210ENST00000568357 SNAPINO95295 136 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 PTTG1IPP53801 180 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 KIAA0087Q14695 138 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 SVBPQ8N300 66 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 PKIGQ9Y2B9 76 aa9.44□□□□□ -0.9
VPS39-210ENST00000568357 RNF213Q63HN8 5207 aa9.43□□□□□ -0.9
VPS39-210ENST00000568357 RNF151Q2KHN1 245 aa9.43□□□□□ -0.9
VPS39-210ENST00000568357 UNQ6190/PRO20217Q6UXQ8 127 aa9.43□□□□□ -0.9
VPS39-210ENST00000568357 TIMM17AQ99595 171 aa9.43□□□□□ -0.9
VPS39-210ENST00000568357 F8WDY8 70 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 NDUFA5Q16718 116 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 ERASQ7Z444 233 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 FAM19A3Q7Z5A8 133 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 SCGB3A1Q96QR1 104 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 MRPL35Q9NZE8 188 aaKnown RBP9.42□□□□□ -0.9
VPS39-210ENST00000568357 TRAPPC1Q9Y5R8 145 aa9.42□□□□□ -0.9
VPS39-210ENST00000568357 NDUFA1O15239 70 aa9.41□□□□□ -0.9
VPS39-210ENST00000568357 PAPPA-AS1Q5QFB9 102 aa9.41□□□□□ -0.9
VPS39-210ENST00000568357 C7orf33Q8WU49 177 aa9.41□□□□□ -0.9
VPS39-210ENST00000568357 A0A1W2PNN7 141 aa9.4□□□□□ -0.9
VPS39-210ENST00000568357 FA2HQ7L5A8 372 aa9.4□□□□□ -0.9
VPS39-210ENST00000568357 LINC01561Q8N1V8 128 aa9.4□□□□□ -0.9
VPS39-210ENST00000568357 C6orf48Q9UBA6 75 aa9.4□□□□□ -0.9
VPS39-210ENST00000568357 PKHD1L1Q86WI1 4243 aa9.4□□□□□ -0.91
VPS39-210ENST00000568357 RPL18AQ02543 176 aaKnown RBP9.39□□□□□ -0.91
VPS39-210ENST00000568357 C2orf82Q6UX34 121 aa9.39□□□□□ -0.91
VPS39-210ENST00000568357 URB1-AS1Q96HZ7 61 aa9.39□□□□□ -0.91
VPS39-210ENST00000568357 YPEL4Q96NS1 127 aa9.39□□□□□ -0.91
VPS39-210ENST00000568357 CDKN2A-AS1Q9UH64 79 aa9.39□□□□□ -0.91
VPS39-210ENST00000568357 C18orf32Q8TCD1 76 aa9.38□□□□□ -0.91
VPS39-210ENST00000568357 SMCO4Q9NRQ5 59 aa9.38□□□□□ -0.91
VPS39-210ENST00000568357 HERVK_113P63121 156 aa9.37□□□□□ -0.91
VPS39-210ENST00000568357 C9orf116Q5BN46 136 aaPredicted RBP9.37□□□□□ -0.91
VPS39-210ENST00000568357 Q6ZRP5 223 aa9.37□□□□□ -0.91
VPS39-210ENST00000568357 CST9LQ9H4G1 147 aa9.37□□□□□ -0.91
VPS39-210ENST00000568357 A0A096LNJ9 63 aa9.36□□□□□ -0.91
VPS39-210ENST00000568357 LINC01549A6NIU2 74 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms