RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NPSP0C0P6 89 aa11.28□□□□□ -0.6
CLN3-217ENST00000565354 MALP21145 153 aa11.28□□□□□ -0.6
CLN3-217ENST00000565354 COLCA2A8K830 154 aa11.27□□□□□ -0.61
CLN3-217ENST00000565354 PRSS1P07477 247 aa11.27□□□□□ -0.61
CLN3-217ENST00000565354 TIMM17AQ99595 171 aa11.27□□□□□ -0.61
CLN3-217ENST00000565354 IGIPA6NJ69 53 aa11.26□□□□□ -0.61
CLN3-217ENST00000565354 COX7A2LO14548 114 aa11.26□□□□□ -0.61
CLN3-217ENST00000565354 ERASQ7Z444 233 aa11.26□□□□□ -0.61
CLN3-217ENST00000565354 FAM104AQ969W3 186 aa11.26□□□□□ -0.61
CLN3-217ENST00000565354 IGHV1-58A0A0C4DH39 117 aa11.25□□□□□ -0.61
CLN3-217ENST00000565354 FAM229AH3BQW9 127 aa11.25□□□□□ -0.61
CLN3-217ENST00000565354 J3QL48 77 aa11.25□□□□□ -0.61
CLN3-217ENST00000565354 HIGD2BQ4VC39 106 aa11.25□□□□□ -0.61
CLN3-217ENST00000565354 BAGE3Q86Y29 109 aa11.25□□□□□ -0.61
CLN3-217ENST00000565354 HBDP02042 147 aa11.24□□□□□ -0.61
CLN3-217ENST00000565354 S100A1P23297 94 aa11.24□□□□□ -0.61
CLN3-217ENST00000565354 C5orf38Q86SI9 138 aa11.24□□□□□ -0.61
CLN3-217ENST00000565354 C15orf56Q8N910 161 aa11.24□□□□□ -0.61
CLN3-217ENST00000565354 APOMO95445 188 aa11.23□□□□□ -0.61
CLN3-217ENST00000565354 ZC2HC1BQ5TFG8 222 aa11.23□□□□□ -0.61
CLN3-217ENST00000565354 URB1-AS1Q96HZ7 61 aa11.23□□□□□ -0.61
CLN3-217ENST00000565354 AMELXQ99217 191 aa11.23□□□□□ -0.61
CLN3-217ENST00000565354 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.22□□□□□ -0.61
CLN3-217ENST00000565354 PMCHL1Q16048 86 aa11.22□□□□□ -0.61
CLN3-217ENST00000565354 CHCHD1Q96BP2 118 aaKnown RBP11.22□□□□□ -0.61
CLN3-217ENST00000565354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.21□□□□□ -0.61
CLN3-217ENST00000565354 ZNF561-AS1K7EIQ3 104 aa11.21□□□□□ -0.61
CLN3-217ENST00000565354 ATP6V1G1O75348 118 aa11.21□□□□□ -0.61
CLN3-217ENST00000565354 UBE2D1P51668 147 aa11.21□□□□□ -0.61
CLN3-217ENST00000565354 GVQW2A0A096LPI5 108 aaPredicted RBP11.2□□□□□ -0.62
CLN3-217ENST00000565354 HSBP1O75506 76 aa11.2□□□□□ -0.62
CLN3-217ENST00000565354 SEC11AP67812 179 aa11.2□□□□□ -0.62
CLN3-217ENST00000565354 LINC01620Q4KN68 170 aa11.2□□□□□ -0.62
CLN3-217ENST00000565354 LINC00173Q6ZV60 143 aa11.2□□□□□ -0.62
CLN3-217ENST00000565354 NDUFA6P56556 154 aa11.19□□□□□ -0.62
CLN3-217ENST00000565354 HAMPP81172 84 aa11.19□□□□□ -0.62
CLN3-217ENST00000565354 LINC00242Q5T6M2 205 aa11.19□□□□□ -0.62
CLN3-217ENST00000565354 GEMIN7Q9H840 131 aaKnown RBP11.19□□□□□ -0.62
CLN3-217ENST00000565354 A0A096LNJ9 63 aa11.18□□□□□ -0.62
CLN3-217ENST00000565354 IGHV3OR16-9A0A0B4J2B5 98 aa11.18□□□□□ -0.62
CLN3-217ENST00000565354 ATP5LO75964 103 aa11.18□□□□□ -0.62
CLN3-217ENST00000565354 CNBPP62633 177 aaKnown RBP11.18□□□□□ -0.62
CLN3-217ENST00000565354 HERVK_113P63121 156 aa11.17□□□□□ -0.62
CLN3-217ENST00000565354 COX6A2Q02221 97 aa11.17□□□□□ -0.62
CLN3-217ENST00000565354 PMVKQ15126 192 aa11.17□□□□□ -0.62
CLN3-217ENST00000565354 C9orf163Q8N9P6 203 aa11.17□□□□□ -0.62
CLN3-217ENST00000565354 SPAG11BQ08648 103 aa11.16□□□□□ -0.62
CLN3-217ENST00000565354 ORAOV1Q8WV07 137 aa11.16□□□□□ -0.62
CLN3-217ENST00000565354 LINC00526Q96FQ7 95 aa11.16□□□□□ -0.62
CLN3-217ENST00000565354 IGHV3-64A0A075B6Q5 118 aa11.15□□□□□ -0.62
CLN3-217ENST00000565354 A0A0J9YXV3 536 aa11.15□□□□□ -0.62
CLN3-217ENST00000565354 PDZD11Q5EBL8 140 aa11.15□□□□□ -0.62
CLN3-217ENST00000565354 OR10D4PQ8NGN7 298 aa11.15□□□□□ -0.62
CLN3-217ENST00000565354 CST9LQ9H4G1 147 aa11.15□□□□□ -0.62
CLN3-217ENST00000565354 IGLV4-69A0A075B6H9 119 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 A0A087WZ39 114 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 SERF1AO75920 110 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 SLPIP03973 132 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 FAM19A3Q7Z5A8 133 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 CARD19Q96LW7 228 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 PACRGQ96M98 296 aaPredicted RBP11.14□□□□□ -0.63
CLN3-217ENST00000565354 CAMK2N2Q96S95 79 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 UBR4Q5T4S7 5183 aa11.14□□□□□ -0.63
CLN3-217ENST00000565354 KRTAP29-1A8MX34 341 aaPredicted RBP11.13□□□□□ -0.63
CLN3-217ENST00000565354 SYCNQ0VAF6 134 aa11.13□□□□□ -0.63
CLN3-217ENST00000565354 FAM19A2Q8N3H0 131 aa11.13□□□□□ -0.63
CLN3-217ENST00000565354 LINC00469Q8N7U9 141 aa11.13□□□□□ -0.63
CLN3-217ENST00000565354 TINCRA0A1B0GVN0 87 aa11.12□□□□□ -0.63
CLN3-217ENST00000565354 LINC01561Q8N1V8 128 aa11.12□□□□□ -0.63
CLN3-217ENST00000565354 IFI27L1Q96BM0 104 aa11.11□□□□□ -0.63
CLN3-217ENST00000565354 C2orf48Q96LS8 159 aa11.11□□□□□ -0.63
CLN3-217ENST00000565354 FAM30AQ9NZY2 134 aa11.11□□□□□ -0.63
CLN3-217ENST00000565354 PKIGQ9Y2B9 76 aa11.11□□□□□ -0.63
CLN3-217ENST00000565354 DNAH8Q96JB1 4490 aa11.11□□□□□ -0.63
CLN3-217ENST00000565354 PRSS2P07478 247 aa11.1□□□□□ -0.63
CLN3-217ENST00000565354 SERTAD4-AS1Q5TG53 156 aa11.1□□□□□ -0.63
CLN3-217ENST00000565354 TOMM7Q9P0U1 55 aa11.1□□□□□ -0.63
CLN3-217ENST00000565354 CDKN2A-AS1Q9UH64 79 aa11.1□□□□□ -0.63
CLN3-217ENST00000565354 HMCN2Q8NDA2 5059 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BKO60814 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 LEPROTL1O95214 131 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BJP06899 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BOP23527 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BBP33778 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BDP58876 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BCP62807 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST2H2BEQ16778 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BHQ93079 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BNQ99877 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 HIST1H2BMQ99879 126 aa11.09□□□□□ -0.63
CLN3-217ENST00000565354 F8WDY8 70 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 H3BRM9 83 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 NDUFA1O15239 70 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 SDIM1Q6ZPB5 146 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 Q6ZRU5 148 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 DPH3Q96FX2 82 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 CHAC1Q9BUX1 264 aa11.08□□□□□ -0.64
CLN3-217ENST00000565354 PLA2G1BP04054 148 aaKnown RBP11.07□□□□□ -0.64
CLN3-217ENST00000565354 LINC00310P59036 64 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 199.5 ms