RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 IGHV1-58A0A0C4DH39 117 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 LINC01549A6NIU2 74 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 MALP21145 153 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 S100A1P23297 94 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 PAPPA-AS1Q5QFB9 102 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 BAGE3Q86Y29 109 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 LINC00526Q96FQ7 95 aa11.36□□□□□ -0.59
SHMT2-225ENST00000556798 IGHV3OR16-9A0A0B4J2B5 98 aa11.35□□□□□ -0.59
SHMT2-225ENST00000556798 SLPIP03973 132 aa11.35□□□□□ -0.59
SHMT2-225ENST00000556798 COX6A2Q02221 97 aa11.35□□□□□ -0.59
SHMT2-225ENST00000556798 CHCHD1Q96BP2 118 aaKnown RBP11.35□□□□□ -0.59
SHMT2-225ENST00000556798 DNAH8Q96JB1 4490 aa11.34□□□□□ -0.59
SHMT2-225ENST00000556798 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-225ENST00000556798 PDZD11Q5EBL8 140 aa11.33□□□□□ -0.6
SHMT2-225ENST00000556798 SERF1AO75920 110 aa11.32□□□□□ -0.6
SHMT2-225ENST00000556798 LINC00310P59036 64 aa11.32□□□□□ -0.6
SHMT2-225ENST00000556798 CNBPP62633 177 aaKnown RBP11.32□□□□□ -0.6
SHMT2-225ENST00000556798 RYR1P21817 5038 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 A0A0J9YXV3 536 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 HSBP1O75506 76 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 HAMPP81172 84 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 PMVKQ15126 192 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 FAM19A2Q8N3H0 131 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 CST9LQ9H4G1 147 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 FAM30AQ9NZY2 134 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 HSPG2P98160 4391 aa11.31□□□□□ -0.6
SHMT2-225ENST00000556798 ZNF561-AS1K7EIQ3 104 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 CDK2AP2O75956 126 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 APOMO95445 188 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 NDUFA6P56556 154 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 FAM19A3Q7Z5A8 133 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 C9orf163Q8N9P6 203 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 ORAOV1Q8WV07 137 aa11.3□□□□□ -0.6
SHMT2-225ENST00000556798 IGLV4-69A0A075B6H9 119 aa11.29□□□□□ -0.6
SHMT2-225ENST00000556798 A0A087WZ39 114 aa11.29□□□□□ -0.6
SHMT2-225ENST00000556798 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-225ENST00000556798 SPAG11BQ08648 103 aa11.29□□□□□ -0.6
SHMT2-225ENST00000556798 IGHV3-64A0A075B6Q5 118 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 NUPR1O60356 82 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BKO60814 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 ATP5LO75964 103 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BJP06899 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BOP23527 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BBP33778 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BDP58876 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BCP62807 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HERVK_113P63121 156 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST2H2BEQ16778 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BHQ93079 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BNQ99877 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 HIST1H2BMQ99879 126 aa11.28□□□□□ -0.6
SHMT2-225ENST00000556798 GEMIN7Q9H840 131 aaKnown RBP11.28□□□□□ -0.6
SHMT2-225ENST00000556798 XGP55808 180 aa11.27□□□□□ -0.61
SHMT2-225ENST00000556798 SEC11AP67812 179 aa11.27□□□□□ -0.61
SHMT2-225ENST00000556798 CDKN2A-AS1Q9UH64 79 aa11.27□□□□□ -0.61
SHMT2-225ENST00000556798 OR10D4PQ8NGN7 298 aa11.26□□□□□ -0.61
SHMT2-225ENST00000556798 CARD19Q96LW7 228 aa11.26□□□□□ -0.61
SHMT2-225ENST00000556798 HERC2O95714 4834 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 TINCRA0A1B0GVN0 87 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 SYCNQ0VAF6 134 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 Q6ZSA8 131 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 LINC00469Q8N7U9 141 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 IFI27L1Q96BM0 104 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 CAMK2N2Q96S95 79 aa11.25□□□□□ -0.61
SHMT2-225ENST00000556798 SDIM1Q6ZPB5 146 aa11.24□□□□□ -0.61
SHMT2-225ENST00000556798 Q6ZRU5 148 aa11.24□□□□□ -0.61
SHMT2-225ENST00000556798 LINC01561Q8N1V8 128 aa11.23□□□□□ -0.61
SHMT2-225ENST00000556798 C2orf48Q96LS8 159 aa11.23□□□□□ -0.61
SHMT2-225ENST00000556798 CHAC1Q9BUX1 264 aa11.23□□□□□ -0.61
SHMT2-225ENST00000556798 PANO1I0J062 215 aa11.22□□□□□ -0.61
SHMT2-225ENST00000556798 IGLC3P0DOY3 106 aa11.22□□□□□ -0.61
SHMT2-225ENST00000556798 PACRGQ96M98 296 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-225ENST00000556798 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-225ENST00000556798 IGLV5-45A0A087WSX0 123 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 LEPROTL1O95214 131 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 CHTF8P0CG12 524 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 KIAA0087Q14695 138 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 KRTAP17-1Q9BYP8 105 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 TOMM7Q9P0U1 55 aa11.21□□□□□ -0.61
SHMT2-225ENST00000556798 FABP4P15090 132 aa11.2□□□□□ -0.62
SHMT2-225ENST00000556798 SCXQ7RTU7 201 aa11.2□□□□□ -0.62
SHMT2-225ENST00000556798 SMIM1B2RUZ4 78 aa11.19□□□□□ -0.62
SHMT2-225ENST00000556798 H0Y8G0 127 aa11.19□□□□□ -0.62
SHMT2-225ENST00000556798 SPINK8P0C7L1 97 aa11.19□□□□□ -0.62
SHMT2-225ENST00000556798 C10orf25Q5T742 122 aa11.19□□□□□ -0.62
SHMT2-225ENST00000556798 C2orf82Q6UX34 121 aa11.19□□□□□ -0.62
SHMT2-225ENST00000556798 CHTOPQ9Y3Y2 248 aaKnown RBP11.19□□□□□ -0.62
SHMT2-225ENST00000556798 TRAV12-1A0A0B4J245 112 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 IGKV2-24A0A0C4DH68 120 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 C11orf86A6NJI1 115 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 NDUFA1O15239 70 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 PRSS2P07478 247 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 ZNF22P17026 224 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-225ENST00000556798 UNQ6190/PRO20217Q6UXQ8 127 aa11.18□□□□□ -0.62
SHMT2-225ENST00000556798 SMR3BP02814 79 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-225ENST00000556798 CIRBP-AS1Q8TBR5 109 aa11.17□□□□□ -0.62
SHMT2-225ENST00000556798 A0A096LNI7 61 aa11.16□□□□□ -0.62
SHMT2-225ENST00000556798 H3BRM9 83 aa11.16□□□□□ -0.62
SHMT2-225ENST00000556798 Q8IZM0 81 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms