RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 Q8N3U1 123 aa12.75□□□□□ -0.37
SYNE3-204ENST00000555759 FAM30AQ9NZY2 134 aa12.75□□□□□ -0.37
SYNE3-204ENST00000555759 J3QKU1 62 aa12.75□□□□□ -0.37
SYNE3-204ENST00000555759 SYCNQ0VAF6 134 aa12.75□□□□□ -0.37
SYNE3-204ENST00000555759 PRR4Q16378 134 aa12.75□□□□□ -0.37
SYNE3-204ENST00000555759 MUC22E2RYF6 1773 aaPredicted RBP12.74□□□□□ -0.37
SYNE3-204ENST00000555759 WFDC13Q8IUB5 93 aa12.74□□□□□ -0.37
SYNE3-204ENST00000555759 IGLV1-40P01703 118 aa12.74□□□□□ -0.37
SYNE3-204ENST00000555759 CASC2Q6XLA1 102 aa12.74□□□□□ -0.37
SYNE3-204ENST00000555759 K7ERS5 55 aa12.73□□□□□ -0.37
SYNE3-204ENST00000555759 C11orf71Q6IPW1 123 aa12.73□□□□□ -0.37
SYNE3-204ENST00000555759 Q8N9L7 120 aa12.73□□□□□ -0.37
SYNE3-204ENST00000555759 ANKHD1Q8IWZ3 2542 aaKnown RBP12.73□□□□□ -0.37
SYNE3-204ENST00000555759 LINC00846Q9NV44 126 aa12.73□□□□□ -0.37
SYNE3-204ENST00000555759 A0A087WZ39 114 aa12.72□□□□□ -0.37
SYNE3-204ENST00000555759 SBSPONQ8IVN8 264 aa12.72□□□□□ -0.37
SYNE3-204ENST00000555759 BCE1O60756 84 aa12.71□□□□□ -0.38
SYNE3-204ENST00000555759 TRBV7-6A0A0J9YX20 115 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 KIR2DL5BQ8NHK3 375 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 TMEM254Q8TBM7 123 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 C10orf142B7Z368 130 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 COX6A2Q02221 97 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 DNAJC9-AS1A6NH13 148 aa12.69□□□□□ -0.38
SYNE3-204ENST00000555759 PRR14LQ5THK1 2151 aa12.68□□□□□ -0.38
SYNE3-204ENST00000555759 ZNF580Q9UK33 172 aa12.68□□□□□ -0.38
SYNE3-204ENST00000555759 CELA1Q9UNI1 258 aa12.68□□□□□ -0.38
SYNE3-204ENST00000555759 IGKV2-24A0A0C4DH68 120 aa12.67□□□□□ -0.38
SYNE3-204ENST00000555759 BBC3Q96PG8 261 aaPredicted RBP12.67□□□□□ -0.38
SYNE3-204ENST00000555759 C4orf48Q5BLP8 95 aa12.67□□□□□ -0.38
SYNE3-204ENST00000555759 LELP1Q5T871 98 aa12.67□□□□□ -0.38
SYNE3-204ENST00000555759 WFDC10AQ9H1F0 79 aa12.67□□□□□ -0.38
SYNE3-204ENST00000555759 ZFHX2Q9C0A1 2572 aaPredicted RBP12.67□□□□□ -0.38
SYNE3-204ENST00000555759 LOC100131303A0A0U1RQF7 123 aa12.66□□□□□ -0.38
SYNE3-204ENST00000555759 ARHGAP32A7KAX9 2087 aa12.66□□□□□ -0.38
SYNE3-204ENST00000555759 CXCL6P80162 114 aa12.65□□□□□ -0.38
SYNE3-204ENST00000555759 IGKV2-28A0A075B6P5 120 aa12.65□□□□□ -0.38
SYNE3-204ENST00000555759 IGKV2D-28P01615 120 aa12.65□□□□□ -0.38
SYNE3-204ENST00000555759 NAV3Q8IVL0 2385 aa12.65□□□□□ -0.38
SYNE3-204ENST00000555759 ESRGQ1W209 222 aa12.65□□□□□ -0.38
SYNE3-204ENST00000555759 Q6ZVQ6 151 aa12.65□□□□□ -0.39
SYNE3-204ENST00000555759 LRCOL1A6NCL2 159 aa12.63□□□□□ -0.39
SYNE3-204ENST00000555759 BRI3O95415 125 aa12.63□□□□□ -0.39
SYNE3-204ENST00000555759 C10orf99Q6UWK7 81 aa12.63□□□□□ -0.39
SYNE3-204ENST00000555759 WNK1Q9H4A3 2382 aa12.63□□□□□ -0.39
SYNE3-204ENST00000555759 CYSRT1A8MQ03 144 aa12.63□□□□□ -0.39
SYNE3-204ENST00000555759 LINC01547P58512 204 aaPredicted RBP12.62□□□□□ -0.39
SYNE3-204ENST00000555759 A0A096LNI7 61 aa12.62□□□□□ -0.39
SYNE3-204ENST00000555759 ZNF843Q8N446 348 aa12.62□□□□□ -0.39
SYNE3-204ENST00000555759 C11orf45Q8TAV5 145 aa12.62□□□□□ -0.39
SYNE3-204ENST00000555759 BDP1A6H8Y1 2624 aa12.62□□□□□ -0.39
SYNE3-204ENST00000555759 LINC00208Q96KT6 92 aa12.61□□□□□ -0.39
SYNE3-204ENST00000555759 A0A0J9YWU9 116 aa12.61□□□□□ -0.39
SYNE3-204ENST00000555759 ZNF702PQ9H963 129 aa12.61□□□□□ -0.39
SYNE3-204ENST00000555759 KIF25-AS1Q9Y6Z4 181 aa12.6□□□□□ -0.39
SYNE3-204ENST00000555759 MUC6Q6W4X9 2439 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 CPAMD8Q8IZJ3 1885 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 HILS1P60008 231 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 EGFEM1PQ0D2K5 195 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 PRM2P04554 102 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 C1orf137Q5JT78 98 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 RETNQ9HD89 108 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 TTC28Q96AY4 2481 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 BEAN1Q3B7T3 259 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 LINC01561Q8N1V8 128 aa12.59□□□□□ -0.39
SYNE3-204ENST00000555759 PSPHP1O15172 72 aa12.58□□□□□ -0.4
SYNE3-204ENST00000555759 LINC00575Q6W349 94 aa12.58□□□□□ -0.4
SYNE3-204ENST00000555759 IGHV4-31P0DP07 118 aa12.58□□□□□ -0.4
SYNE3-204ENST00000555759 IGLV5-39A0A0G2JS06 123 aa12.57□□□□□ -0.4
SYNE3-204ENST00000555759 LINC00337Q8N6G1 96 aa12.57□□□□□ -0.4
SYNE3-204ENST00000555759 UNQ6190/PRO20217Q6UXQ8 127 aa12.56□□□□□ -0.4
SYNE3-204ENST00000555759 C4orf26Q17RF5 130 aa12.55□□□□□ -0.4
SYNE3-204ENST00000555759 DEFB131BA0A096LNP1 70 aa12.55□□□□□ -0.4
SYNE3-204ENST00000555759 IGLV4-60A0A075B6I1 120 aa12.53□□□□□ -0.4
SYNE3-204ENST00000555759 ZNF706Q9Y5V0 76 aaPredicted RBP12.53□□□□□ -0.4
SYNE3-204ENST00000555759 hDV103S1A0JD37 113 aa12.53□□□□□ -0.4
SYNE3-204ENST00000555759 PRR3P79522 188 aaKnown RBP12.53□□□□□ -0.4
SYNE3-204ENST00000555759 PTPRQQ9UMZ3 2332 aa12.52□□□□□ -0.4
SYNE3-204ENST00000555759 AGRNO00468 2067 aa12.51□□□□□ -0.41
SYNE3-204ENST00000555759 LIMD2Q9BT23 127 aa12.51□□□□□ -0.41
SYNE3-204ENST00000555759 C19orf84I3L1E1 186 aa12.51□□□□□ -0.41
SYNE3-204ENST00000555759 C9orf116Q5BN46 136 aaPredicted RBP12.5□□□□□ -0.41
SYNE3-204ENST00000555759 COL5A1P20908 1838 aaPredicted RBP12.5□□□□□ -0.41
SYNE3-204ENST00000555759 A0A1B0GUV1 79 aa12.49□□□□□ -0.41
SYNE3-204ENST00000555759 RPL37AP8A6NKH3 93 aa12.49□□□□□ -0.41
SYNE3-204ENST00000555759 C2CD3Q4AC94 2353 aa12.49□□□□□ -0.41
SYNE3-204ENST00000555759 NANOS2P60321 138 aaKnown RBP12.49□□□□□ -0.41
SYNE3-204ENST00000555759 ODF3L2Q3SX64 289 aa12.49□□□□□ -0.41
SYNE3-204ENST00000555759 FAM208BQ5VWN6 2430 aa12.48□□□□□ -0.41
SYNE3-204ENST00000555759 LINC00315P59091 139 aa12.47□□□□□ -0.41
SYNE3-204ENST00000555759 F8WDY8 70 aa12.47□□□□□ -0.41
SYNE3-204ENST00000555759 Q6ZSN1 163 aa12.47□□□□□ -0.41
SYNE3-204ENST00000555759 LRP4O75096 1905 aa12.47□□□□□ -0.41
SYNE3-204ENST00000555759 EDN2P20800 178 aa12.47□□□□□ -0.41
SYNE3-204ENST00000555759 KPRPQ5T749 579 aaPredicted RBP12.47□□□□□ -0.41
SYNE3-204ENST00000555759 PTPRSQ13332 1948 aa12.46□□□□□ -0.41
SYNE3-204ENST00000555759 LINC00482Q8N8I6 264 aa12.46□□□□□ -0.41
SYNE3-204ENST00000555759 C10orf25Q5T742 122 aa12.46□□□□□ -0.42
SYNE3-204ENST00000555759 IGLV5-45A0A087WSX0 123 aa12.45□□□□□ -0.42
SYNE3-204ENST00000555759 HCG22E2RYF7 251 aa12.45□□□□□ -0.42
SYNE3-204ENST00000555759 C18orf65Q6ZTR6 163 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms