RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NDUFA5Q16718 116 aa8.75□□□□□ -1.01
SHMT2-219ENST00000555563 COX19Q49B96 90 aa8.75□□□□□ -1.01
SHMT2-219ENST00000555563 CARD19Q96LW7 228 aa8.75□□□□□ -1.01
SHMT2-219ENST00000555563 IGLV4-69A0A075B6H9 119 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 IGHV3OR16-9A0A0B4J2B5 98 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 SNAPINO95295 136 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 SVBPQ8N300 66 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 PRSS3P2Q8NHM4 247 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 ALKBH7Q9BT30 221 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-219ENST00000555563 MRPL18Q9H0U6 180 aaKnown RBP8.74□□□□□ -1.01
SHMT2-219ENST00000555563 DNAH8Q96JB1 4490 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 FAT1Q14517 4588 aa8.74□□□□□ -1.01
SHMT2-219ENST00000555563 TGIF2-C20orf24A0A0A6YYL0 155 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 APOMO95445 188 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 SPAG11BQ08648 103 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 SYCNQ0VAF6 134 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 ZC2HC1BQ5TFG8 222 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 TEX43Q6ZNM6 134 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 LINC00173Q6ZV60 143 aa8.73□□□□□ -1.01
SHMT2-219ENST00000555563 A0A087WYN8 130 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 IGKV2-24A0A0C4DH68 120 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 IGIPA6NJ69 53 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 KRTAP10-4P60372 401 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-219ENST00000555563 FABP9Q0Z7S8 132 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 LINC00242Q5T6M2 205 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 Q6ZN92 141 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 C2orf88Q9BSF0 95 aa8.72□□□□□ -1.01
SHMT2-219ENST00000555563 A0A096LNI7 61 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 NPSP0C0P6 89 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 UBE2D1P51668 147 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 Q6ZRU5 148 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 OR10D4PQ8NGN7 298 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 ORAOV1Q8WV07 137 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 TOMM6Q96B49 74 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 CAMK2N2Q96S95 79 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 AMELXQ99217 191 aa8.71□□□□□ -1.02
SHMT2-219ENST00000555563 MAJINQ3KP22 176 aa8.7□□□□□ -1.02
SHMT2-219ENST00000555563 DPH3Q96FX2 82 aa8.7□□□□□ -1.02
SHMT2-219ENST00000555563 C2orf48Q96LS8 159 aa8.7□□□□□ -1.02
SHMT2-219ENST00000555563 PKIGQ9Y2B9 76 aa8.7□□□□□ -1.02
SHMT2-219ENST00000555563 A0A087WZ39 114 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 LINC01546A6NGU7 62 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 G0S2P27469 103 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 RPL37AP61513 92 aaKnown RBP8.69□□□□□ -1.02
SHMT2-219ENST00000555563 TIMM17AQ99595 171 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 VCX2Q9H322 139 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 PLAC8Q9NZF1 115 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 TRAPPC1Q9Y5R8 145 aa8.69□□□□□ -1.02
SHMT2-219ENST00000555563 FA2HQ7L5A8 372 aa8.68□□□□□ -1.02
SHMT2-219ENST00000555563 PAPPA-AS1Q5QFB9 102 aa8.67□□□□□ -1.02
SHMT2-219ENST00000555563 STPG4Q8N801 248 aa8.67□□□□□ -1.02
SHMT2-219ENST00000555563 YPEL4Q96NS1 127 aa8.67□□□□□ -1.02
SHMT2-219ENST00000555563 SCGB3A1Q96QR1 104 aa8.67□□□□□ -1.02
SHMT2-219ENST00000555563 SMCO4Q9NRQ5 59 aa8.67□□□□□ -1.02
SHMT2-219ENST00000555563 VPS13BQ7Z7G8 4022 aa8.66□□□□□ -1.02
SHMT2-219ENST00000555563 LOC107984640A0A0U1RRK4 108 aa8.66□□□□□ -1.02
SHMT2-219ENST00000555563 ERASQ7Z444 233 aa8.66□□□□□ -1.02
SHMT2-219ENST00000555563 LINC00474Q9P2X8 69 aa8.66□□□□□ -1.02
SHMT2-219ENST00000555563 DMBT1Q9UGM3 2413 aaPredicted RBP8.66□□□□□ -1.02
SHMT2-219ENST00000555563 FLG2Q5D862 2391 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-219ENST00000555563 MYCBP2O75592 4640 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 A0A0J9YXV3 536 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-219ENST00000555563 PTTG1IPP53801 180 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 GAGE2BQ13066 116 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 FAM19A3Q7Z5A8 133 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 C18orf32Q8TCD1 76 aa8.65□□□□□ -1.02
SHMT2-219ENST00000555563 LINC01549A6NIU2 74 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 F8WDY8 70 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 NDUFA1O15239 70 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 KIAA0087Q14695 138 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 C10orf25Q5T742 122 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 CBLN2Q8IUK8 224 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 URB1-AS1Q96HZ7 61 aa8.64□□□□□ -1.03
SHMT2-219ENST00000555563 MRPL35Q9NZE8 188 aaKnown RBP8.64□□□□□ -1.03
SHMT2-219ENST00000555563 SRRM2Q9UQ35 2752 aaKnown RBP8.63□□□□□ -1.03
SHMT2-219ENST00000555563 SEC11AP67812 179 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 RPL18AQ02543 176 aaKnown RBP8.63□□□□□ -1.03
SHMT2-219ENST00000555563 RNF151Q2KHN1 245 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 UNQ6190/PRO20217Q6UXQ8 127 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 SLC7A5P1Q8MH63 180 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 LINC01561Q8N1V8 128 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 C6orf48Q9UBA6 75 aa8.63□□□□□ -1.03
SHMT2-219ENST00000555563 A0A096LNJ9 63 aa8.62□□□□□ -1.03
SHMT2-219ENST00000555563 HNRNPA3P51991 378 aaKnown RBP8.62□□□□□ -1.03
SHMT2-219ENST00000555563 HERVK_113P63121 156 aa8.62□□□□□ -1.03
SHMT2-219ENST00000555563 C7orf33Q8WU49 177 aa8.62□□□□□ -1.03
SHMT2-219ENST00000555563 GEMIN7Q9H840 131 aaKnown RBP8.62□□□□□ -1.03
SHMT2-219ENST00000555563 CDKN2A-AS1Q9UH64 79 aa8.62□□□□□ -1.03
SHMT2-219ENST00000555563 C2orf82Q6UX34 121 aa8.61□□□□□ -1.03
SHMT2-219ENST00000555563 J3QL48 77 aa8.6□□□□□ -1.03
SHMT2-219ENST00000555563 LINC00614P0C842 121 aa8.6□□□□□ -1.03
SHMT2-219ENST00000555563 PMCHL1Q16048 86 aa8.6□□□□□ -1.03
SHMT2-219ENST00000555563 CST9LQ9H4G1 147 aa8.6□□□□□ -1.03
SHMT2-219ENST00000555563 TOMM7Q9P0U1 55 aa8.6□□□□□ -1.03
SHMT2-219ENST00000555563 HBDP02042 147 aa8.59□□□□□ -1.03
SHMT2-219ENST00000555563 PMVKQ15126 192 aa8.59□□□□□ -1.03
SHMT2-219ENST00000555563 LINC00469Q8N7U9 141 aa8.59□□□□□ -1.03
SHMT2-219ENST00000555563 PACRGQ96M98 296 aaPredicted RBP8.59□□□□□ -1.03
SHMT2-219ENST00000555563 IGLV5-45A0A087WSX0 123 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms