RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SLPIP03973 132 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 INAFM2P0DMQ5 153 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 ZNF25P17030 456 aaPredicted RBP6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 SUMO2P61956 95 aaKnown RBP6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 MRPL52Q86TS9 123 aaKnown RBP6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 CIRBP-AS1Q8TBR5 109 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 TSTD3H0UI37 97 aa6.62□□□□□ -1.35
CCDC88C-206ENST00000553437 CNBPP62633 177 aaKnown RBP6.62□□□□□ -1.35
CCDC88C-206ENST00000553437 MRPL54Q6P161 138 aaKnown RBP6.62□□□□□ -1.35
CCDC88C-206ENST00000553437 OR5A1Q8NGJ0 315 aa6.62□□□□□ -1.35
CCDC88C-206ENST00000553437 CHCHD10Q8WYQ3 142 aaPredicted RBP6.62□□□□□ -1.35
CCDC88C-206ENST00000553437 hDV102S1A0JD36 115 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 CKS2P33552 79 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 RPL32P62910 135 aaKnown RBP6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 HBBP68871 147 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 SDIM1Q6ZPB5 146 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 C15orf56Q8N910 161 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 TMEM101Q96IK0 257 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 C20orf78Q9BR46 151 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 CDC42SE2Q9NRR3 84 aa6.61□□□□□ -1.35
CCDC88C-206ENST00000553437 LINC00959A0A1B0GUT2 108 aa6.6□□□□□ -1.35
CCDC88C-206ENST00000553437 TNFRSF6BO95407 300 aa6.6□□□□□ -1.35
CCDC88C-206ENST00000553437 FOXI1Q12951 378 aa6.6□□□□□ -1.35
CCDC88C-206ENST00000553437 TMEM136Q6ZRR5 245 aa6.6□□□□□ -1.35
CCDC88C-206ENST00000553437 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.6□□□□□ -1.35
CCDC88C-206ENST00000553437 D6R8Y8 96 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 PANO1I0J062 215 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 NPYP01303 97 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 FCER1GP30273 86 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 KRTAP10-4P60372 401 aaPredicted RBP6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 CFAP161Q6P656 301 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 ATP5L2Q7Z4Y8 100 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 ZNF664Q8N3J9 261 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 KIR2DL4Q99706 377 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 UBE2D4Q9Y2X8 147 aa6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 CSDC2Q9Y534 153 aaKnown RBP6.59□□□□□ -1.35
CCDC88C-206ENST00000553437 CCL25O15444 150 aa6.58□□□□□ -1.36
CCDC88C-206ENST00000553437 XCL1P47992 114 aa6.58□□□□□ -1.36
CCDC88C-206ENST00000553437 BAGE3Q86Y29 109 aa6.58□□□□□ -1.36
CCDC88C-206ENST00000553437 FAM104AQ969W3 186 aa6.58□□□□□ -1.36
CCDC88C-206ENST00000553437 AP5S1Q9NUS5 200 aa6.58□□□□□ -1.36
CCDC88C-206ENST00000553437 GVQW2A0A096LPI5 108 aaPredicted RBP6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 SERF1AO75920 110 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 PPBPP02775 128 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 PLA2G1BP04054 148 aaKnown RBP6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 DDTP30046 118 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 CIRBPQ14011 172 aaKnown RBP6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 HIGD2BQ4VC39 106 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 TIMM21Q9BVV7 248 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 SMIM2Q9BVW6 85 aa6.57□□□□□ -1.36
CCDC88C-206ENST00000553437 IGHV3-64A0A075B6Q5 118 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 TCAPO15273 167 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 NUPR1O60356 82 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 LINC00310P59036 64 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 SS18Q15532 418 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 CD164L2Q6UWJ8 174 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 ORMDL3Q8N138 153 aa6.56□□□□□ -1.36
CCDC88C-206ENST00000553437 PRSS47A8MTI9 375 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 SCGB1D1O95968 90 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 RPL39P62891 51 aaKnown RBP6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 SMAGPQ0VAQ4 97 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 RNASE13Q5GAN3 156 aaKnown RBP6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 Q6ZUT4 128 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 PRELID3AQ96N28 172 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 PRO1933Q9H354 126 aa6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 FLG2Q5D862 2391 aaPredicted RBP6.55□□□□□ -1.36
CCDC88C-206ENST00000553437 IGHV1-58A0A0C4DH39 117 aa6.54□□□□□ -1.36
CCDC88C-206ENST00000553437 CHTF8P0CG12 524 aa6.54□□□□□ -1.36
CCDC88C-206ENST00000553437 KIAA1644Q3SXP7 199 aa6.54□□□□□ -1.36
CCDC88C-206ENST00000553437 TRAV13-1A0A0B4J241 112 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 MRPS36P82909 103 aaKnown RBP6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 COX6A2Q02221 97 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 LBHQ53QV2 105 aaPredicted RBP6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 KRTAP5-3Q6L8H2 238 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 TEX43Q6ZNM6 134 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 PRSS3P2Q8NHM4 247 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 C18orf32Q8TCD1 76 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 SPACA4Q8TDM5 124 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 LINC00526Q96FQ7 95 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 C14orf144Q96I85 54 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 OPRPNQ99935 248 aaPredicted RBP6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 SPANXA1Q9NS26 97 aa6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 LRP1Q07954 4544 aaKnown RBP6.53□□□□□ -1.36
CCDC88C-206ENST00000553437 HMCN2Q8NDA2 5059 aa6.52□□□□□ -1.36
CCDC88C-206ENST00000553437 PKHD1L1Q86WI1 4243 aa6.52□□□□□ -1.36
CCDC88C-206ENST00000553437 A0A087WYN8 130 aa6.52□□□□□ -1.37
CCDC88C-206ENST00000553437 COX7A2LO14548 114 aa6.52□□□□□ -1.37
CCDC88C-206ENST00000553437 LAMTOR2Q9Y2Q5 125 aa6.52□□□□□ -1.37
CCDC88C-206ENST00000553437 FAT3Q8TDW7 4589 aa6.52□□□□□ -1.37
CCDC88C-206ENST00000553437 LOC389332A0A1B0GUA5 103 aa6.51□□□□□ -1.37
CCDC88C-206ENST00000553437 ALKBH7Q9BT30 221 aaPredicted RBP6.51□□□□□ -1.37
CCDC88C-206ENST00000553437 KRTAP4-11Q9BYQ6 195 aa6.51□□□□□ -1.37
CCDC88C-206ENST00000553437 PLAC8Q9NZF1 115 aa6.51□□□□□ -1.37
CCDC88C-206ENST00000553437 RPL37AP61513 92 aaKnown RBP6.5□□□□□ -1.37
CCDC88C-206ENST00000553437 C5orf38Q86SI9 138 aa6.5□□□□□ -1.37
CCDC88C-206ENST00000553437 Q8N8P6 123 aa6.5□□□□□ -1.37
CCDC88C-206ENST00000553437 VAMP8Q9BV40 100 aa6.5□□□□□ -1.37
CCDC88C-206ENST00000553437 MAP1LC3AQ9H492 121 aa6.5□□□□□ -1.37
CCDC88C-206ENST00000553437 PYGO1Q9Y3Y4 419 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms