RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	RP1L1	Q8IWN7	2480 aa	Predicted RBP	0.98	□□□□□ -2.25
MATR3-223	ENST00000514402	PPL	O60437	1756 aa		0.98	□□□□□ -2.25
MATR3-223	ENST00000514402	PLIN4	Q96Q06	1357 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	KIF14	Q15058	1648 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	WNK3	Q9BYP7	1800 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402		A0A1B0GWA3	101 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	ZNF815P	A8K554	130 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402		G3V318	75 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	MGP	P08493	103 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	GCHFR	P30047	84 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	UBR1	Q8IWV7	1749 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	ZDBF2	Q9HCK1	2354 aa		0.97	□□□□□ -2.25
MATR3-223	ENST00000514402	BTAF1	O14981	1849 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402		A0A087WVE0	104 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	C7orf77	A4D0Y5	90 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	ETDB	Q3ZM63	59 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	ZNF720	Q7Z2F6	126 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	FDCSP	Q8NFU4	85 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	LINC00472	Q9H8W2	130 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	ERVK-7	P63135	1459 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	DIP2B	Q9P265	1576 aa		0.96	□□□□□ -2.26
MATR3-223	ENST00000514402	NUP188	Q5SRE5	1749 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	KDM5D	Q9BY66	1539 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	PDCD11	Q14690	1871 aa	Known RBP	0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	AHNAK2	Q8IVF2	5795 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402		F8WEM9	126 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	S100A13	Q99584	98 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	SPCS1	Q9Y6A9	102 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	MAP3K4	Q9Y6R4	1608 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	COL6A6	A6NMZ7	2263 aa		0.95	□□□□□ -2.26
MATR3-223	ENST00000514402	ABCC2	Q92887	1545 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	RAPGEF6	Q8TEU7	1601 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	MUC16	Q8WXI7	14507 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	FXYD6P3	P58550	94 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	ALKAL2	Q6UX46	152 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	SPRR4	Q96PI1	79 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	PSENEN	Q9NZ42	101 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	RABAC1	Q9UI14	185 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	LRRC37A2	A6NM11	1700 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	MAP3K1	Q13233	1512 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	DCAF1	Q9Y4B6	1507 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	MYO7B	Q6PIF6	2116 aa		0.94	□□□□□ -2.26
MATR3-223	ENST00000514402	ROS1	P08922	2347 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	SUPT6H	Q7KZ85	1726 aa	Known RBP	0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	BCE1	O60756	84 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	ARMS2	P0C7Q2	107 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	SMIM11A	P58511	58 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	KRTAP10-4	P60372	401 aa	Predicted RBP	0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	KNTC1	P50748	2209 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	MYO7A	Q13402	2215 aa		0.93	□□□□□ -2.26
MATR3-223	ENST00000514402	IQSEC2	Q5JU85	1478 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	LAMA4	Q16363	1823 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	HMGN2	P05204	90 aa	Known RBP	0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	SNRPF	P62306	86 aa	Known RBP	0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	HAMP	P81172	84 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	WFDC2	Q14508	124 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	NMS	Q5H8A3	153 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402		Q6JHZ5	121 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	ST20	Q9HBF5	79 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	NEXMIF	Q5QGS0	1516 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	KNDC1	Q76NI1	1749 aa		0.92	□□□□□ -2.26
MATR3-223	ENST00000514402	RRBP1	Q9P2E9	1410 aa	Known RBP	0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	LEPROTL1	O95214	131 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	ADIRF	Q15847	76 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	C10orf113	Q5VZT2	155 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	DEFB107A	Q8IZN7	70 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	TMEM263	Q8WUH6	116 aa	Known RBP	0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	PROK2	Q9HC23	129 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	C1orf167	Q5SNV9	1468 aa		0.91	□□□□□ -2.26
MATR3-223	ENST00000514402	IQCF6	A8MYZ5	107 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402		D6R8Y8	96 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	PIN1P1	O15428	100 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	HMGN3	Q15651	99 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	SPINK9	Q5DT21	86 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	LINC00643	Q86TS7	51 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	MUSTN1	Q8IVN3	82 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	UBE2DNL	Q8IWF7	75 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	LINC00846	Q9NV44	126 aa		0.9	□□□□□ -2.27
MATR3-223	ENST00000514402	TMEM131L	A2VDJ0	1609 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	LRP6	O75581	1613 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	LRRIQ1	Q96JM4	1722 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	KANTR	A0A1W2PQU2	76 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	LINC01600	Q96MT4	127 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	MYH4	Q9Y623	1939 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	CUX1	P39880	1505 aa		0.89	□□□□□ -2.27
MATR3-223	ENST00000514402	SHPRH	Q149N8	1683 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402		H0Y9P7	68 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	SPINK7	P58062	85 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	PLAC8	Q9NZF1	115 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	TARBP1	Q13395	1621 aa	Known RBP	0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	NHSL1	Q5SYE7	1610 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	KDM3B	Q7LBC6	1761 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	C5	P01031	1676 aa		0.88	□□□□□ -2.27
MATR3-223	ENST00000514402	ZFHX3	Q15911	3703 aa		0.87	□□□□□ -2.27
MATR3-223	ENST00000514402	XRN1	Q8IZH2	1706 aa	Known RBP	0.87	□□□□□ -2.27
MATR3-223	ENST00000514402	CAD	P27708	2225 aa		0.87	□□□□□ -2.27
MATR3-223	ENST00000514402		A0A0D9SG42	100 aa		0.87	□□□□□ -2.27
MATR3-223	ENST00000514402	TRBV6-1	A0A0K0K1D8	114 aa		0.87	□□□□□ -2.27
MATR3-223	ENST00000514402	MYMX	A0A1B0GTQ4	84 aa		0.87	□□□□□ -2.27

Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms