RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 UBE2BP63146 152 aa8.75□□□□□ -1.01
TRAF4-212ENST00000498540 CEBPGP53567 150 aa8.74□□□□□ -1.01
TRAF4-212ENST00000498540 RPL39P62891 51 aaKnown RBP8.74□□□□□ -1.01
TRAF4-212ENST00000498540 PPP1R17O96001 155 aa8.73□□□□□ -1.01
TRAF4-212ENST00000498540 TMEM241Q24JQ0 296 aa8.73□□□□□ -1.01
TRAF4-212ENST00000498540 TMEM18Q96B42 140 aa8.73□□□□□ -1.01
TRAF4-212ENST00000498540 KRTAP9-6A0A140TA67 174 aa8.72□□□□□ -1.01
TRAF4-212ENST00000498540 TSPAN13O95857 204 aa8.72□□□□□ -1.01
TRAF4-212ENST00000498540 LINC01551Q86U37 167 aa8.72□□□□□ -1.01
TRAF4-212ENST00000498540 SLC51BQ86UW2 128 aa8.72□□□□□ -1.01
TRAF4-212ENST00000498540 CARHSP1Q9Y2V2 147 aaKnown RBP8.72□□□□□ -1.01
TRAF4-212ENST00000498540 PPP1R2P9O14990 202 aa8.71□□□□□ -1.02
TRAF4-212ENST00000498540 MRPL51Q4U2R6 128 aaKnown RBP8.71□□□□□ -1.02
TRAF4-212ENST00000498540 C9orf129Q5T035 196 aaKnown RBP8.71□□□□□ -1.02
TRAF4-212ENST00000498540 FAT4Q6V0I7 4981 aa8.71□□□□□ -1.02
TRAF4-212ENST00000498540 RIGQ13278 110 aa8.7□□□□□ -1.02
TRAF4-212ENST00000498540 KIAA0087Q14695 138 aa8.7□□□□□ -1.02
TRAF4-212ENST00000498540 SMIM7Q9BQ49 75 aa8.7□□□□□ -1.02
TRAF4-212ENST00000498540 IFITM10A6NMD0 228 aa8.69□□□□□ -1.02
TRAF4-212ENST00000498540 C2orf82Q6UX34 121 aa8.69□□□□□ -1.02
TRAF4-212ENST00000498540 OSTCQ9NRP0 149 aa8.69□□□□□ -1.02
TRAF4-212ENST00000498540 SPANXA1Q9NS26 97 aa8.69□□□□□ -1.02
TRAF4-212ENST00000498540 V9GYV3 84 aa8.69□□□□□ -1.02
TRAF4-212ENST00000498540 ZNF861PO60384 105 aa8.68□□□□□ -1.02
TRAF4-212ENST00000498540 HBBP68871 147 aa8.68□□□□□ -1.02
TRAF4-212ENST00000498540 MRPS36P82909 103 aaKnown RBP8.68□□□□□ -1.02
TRAF4-212ENST00000498540 FAM104BQ5XKR9 115 aa8.68□□□□□ -1.02
TRAF4-212ENST00000498540 C20orf78Q9BR46 151 aa8.68□□□□□ -1.02
TRAF4-212ENST00000498540 TRBV24-1A0A075B6N3 115 aa8.67□□□□□ -1.02
TRAF4-212ENST00000498540 TGIF2-C20orf24A0A0A6YYL0 155 aa8.67□□□□□ -1.02
TRAF4-212ENST00000498540 TRBV30A0A0K0K1B3 111 aa8.67□□□□□ -1.02
TRAF4-212ENST00000498540 NDUFC2-KCTD14E9PQ53 114 aa8.67□□□□□ -1.02
TRAF4-212ENST00000498540 RPL32P62910 135 aaKnown RBP8.67□□□□□ -1.02
TRAF4-212ENST00000498540 A0A087X002 238 aa8.66□□□□□ -1.02
TRAF4-212ENST00000498540 SMIM2Q9BVW6 85 aa8.66□□□□□ -1.02
TRAF4-212ENST00000498540 ZNF727A8MUV8 499 aa8.65□□□□□ -1.02
TRAF4-212ENST00000498540 TCAPO15273 167 aa8.65□□□□□ -1.02
TRAF4-212ENST00000498540 TNFRSF6BO95407 300 aa8.65□□□□□ -1.02
TRAF4-212ENST00000498540 LINC00862A6NCI5 91 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 CKS2P33552 79 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 BLOC1S1P78537 153 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 LINC00242Q5T6M2 205 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 ALKAL2Q6UX46 152 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 TCTE3Q8IZS6 198 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 NAT8BQ9UHF3 227 aa8.64□□□□□ -1.03
TRAF4-212ENST00000498540 NUPR1O60356 82 aa8.63□□□□□ -1.03
TRAF4-212ENST00000498540 PACRGQ96M98 296 aaPredicted RBP8.63□□□□□ -1.03
TRAF4-212ENST00000498540 D6R8Y8 96 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 NPYP01303 97 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 FAM74A3Q4VXF1 159 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 LINC00469Q8N7U9 141 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 CTDSP1Q9GZU7 261 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 EIF5A2Q9GZV4 153 aaKnown RBP8.62□□□□□ -1.03
TRAF4-212ENST00000498540 C22orf24Q9Y442 160 aa8.62□□□□□ -1.03
TRAF4-212ENST00000498540 IGLV4-3A0A075B6K6 122 aa8.61□□□□□ -1.03
TRAF4-212ENST00000498540 TYMSOSQ8TAI1 123 aa8.61□□□□□ -1.03
TRAF4-212ENST00000498540 RETNLBQ9BQ08 111 aa8.61□□□□□ -1.03
TRAF4-212ENST00000498540 SRP19P09132 144 aaKnown RBP8.6□□□□□ -1.03
TRAF4-212ENST00000498540 IFI27P40305 119 aaPredicted RBP8.6□□□□□ -1.03
TRAF4-212ENST00000498540 XAGE1AQ9HD64 81 aa8.6□□□□□ -1.03
TRAF4-212ENST00000498540 SMIM27A0A1W2PRY6 76 aa8.59□□□□□ -1.03
TRAF4-212ENST00000498540 CRYGAP11844 174 aa8.59□□□□□ -1.03
TRAF4-212ENST00000498540 RPL28P46779 137 aaKnown RBP8.58□□□□□ -1.04
TRAF4-212ENST00000498540 RPL23P62829 140 aaKnown RBP8.58□□□□□ -1.04
TRAF4-212ENST00000498540 TMEM141Q96I45 108 aa8.58□□□□□ -1.04
TRAF4-212ENST00000498540 ANAPC11Q9NYG5 84 aa8.58□□□□□ -1.04
TRAF4-212ENST00000498540 PYGO1Q9Y3Y4 419 aa8.58□□□□□ -1.04
TRAF4-212ENST00000498540 A0A1B0GW15 77 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 BCE1O60756 84 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 KRTAP13-2Q52LG2 175 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 LBHQ53QV2 105 aaPredicted RBP8.57□□□□□ -1.04
TRAF4-212ENST00000498540 ZC2HC1BQ5TFG8 222 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 MRPL54Q6P161 138 aaKnown RBP8.57□□□□□ -1.04
TRAF4-212ENST00000498540 LINC01561Q8N1V8 128 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 TOMM7Q9P0U1 55 aa8.57□□□□□ -1.04
TRAF4-212ENST00000498540 PRSS2P07478 247 aa8.56□□□□□ -1.04
TRAF4-212ENST00000498540 ADIRFQ15847 76 aa8.56□□□□□ -1.04
TRAF4-212ENST00000498540 TEX43Q6ZNM6 134 aa8.56□□□□□ -1.04
TRAF4-212ENST00000498540 MRPL55Q7Z7F7 128 aaKnown RBP8.56□□□□□ -1.04
TRAF4-212ENST00000498540 MUC17Q685J3 4493 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 A0A1B0GXF2 115 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 RAB5AP20339 215 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 CKS1BP61024 79 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 LINC00173Q6ZV60 143 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 TP73-AS1Q9UF72 201 aa8.55□□□□□ -1.04
TRAF4-212ENST00000498540 F8W036 122 aa8.54□□□□□ -1.04
TRAF4-212ENST00000498540 PPBPP02775 128 aa8.54□□□□□ -1.04
TRAF4-212ENST00000498540 Q6ZN92 141 aa8.54□□□□□ -1.04
TRAF4-212ENST00000498540 Q8IZM0 81 aa8.54□□□□□ -1.04
TRAF4-212ENST00000498540 CDIP1Q9H305 208 aa8.54□□□□□ -1.04
TRAF4-212ENST00000498540 RPL37AP8A6NKH3 93 aa8.53□□□□□ -1.04
TRAF4-212ENST00000498540 TPRXLQ17RH7 258 aa8.53□□□□□ -1.04
TRAF4-212ENST00000498540 C6orf226Q5I0X4 101 aa8.53□□□□□ -1.04
TRAF4-212ENST00000498540 ORMDL3Q8N138 153 aa8.53□□□□□ -1.04
TRAF4-212ENST00000498540 C2orf88Q9BSF0 95 aa8.53□□□□□ -1.04
TRAF4-212ENST00000498540 S100A8P05109 93 aa8.52□□□□□ -1.05
TRAF4-212ENST00000498540 LINC00304Q8N9R0 145 aa8.52□□□□□ -1.05
TRAF4-212ENST00000498540 PRELID3AQ96N28 172 aa8.52□□□□□ -1.05
TRAF4-212ENST00000498540 LINC00167Q96N53 147 aa8.52□□□□□ -1.05
TRAF4-212ENST00000498540 ALKBH7Q9BT30 221 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms