RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 KRTAP10-4P60372 401 aaPredicted RBP9.62□□□□□ -0.87
USP39-217ENST00000491659 SNRPEP62304 92 aaKnown RBP9.62□□□□□ -0.87
USP39-217ENST00000491659 CARD19Q96LW7 228 aa9.62□□□□□ -0.87
USP39-217ENST00000491659 LAMTOR2Q9Y2Q5 125 aa9.62□□□□□ -0.87
USP39-217ENST00000491659 TRAPPC1Q9Y5R8 145 aa9.62□□□□□ -0.87
USP39-217ENST00000491659 J3QL48 77 aa9.61□□□□□ -0.87
USP39-217ENST00000491659 NDUFA6P56556 154 aa9.61□□□□□ -0.87
USP39-217ENST00000491659 LINC00526Q96FQ7 95 aa9.61□□□□□ -0.87
USP39-217ENST00000491659 MAP1LC3AQ9H492 121 aa9.61□□□□□ -0.87
USP39-217ENST00000491659 A0A087WYN8 130 aa9.6□□□□□ -0.87
USP39-217ENST00000491659 IGKV2-24A0A0C4DH68 120 aa9.6□□□□□ -0.87
USP39-217ENST00000491659 C5orf52A6NGY3 159 aa9.6□□□□□ -0.87
USP39-217ENST00000491659 PRSS3P2Q8NHM4 247 aa9.6□□□□□ -0.87
USP39-217ENST00000491659 MYCBP2O75592 4640 aa9.6□□□□□ -0.87
USP39-217ENST00000491659 APOMO95445 188 aa9.59□□□□□ -0.87
USP39-217ENST00000491659 MT-ND6P03923 174 aa9.59□□□□□ -0.87
USP39-217ENST00000491659 IFI27P40305 119 aaPredicted RBP9.59□□□□□ -0.87
USP39-217ENST00000491659 MRPS36P82909 103 aaKnown RBP9.59□□□□□ -0.87
USP39-217ENST00000491659 SYCNQ0VAF6 134 aa9.59□□□□□ -0.87
USP39-217ENST00000491659 FABP9Q0Z7S8 132 aa9.59□□□□□ -0.87
USP39-217ENST00000491659 MAJINQ3KP22 176 aa9.59□□□□□ -0.87
USP39-217ENST00000491659 LOC389332A0A1B0GUA5 103 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 IFITM10A6NMD0 228 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
USP39-217ENST00000491659 C5orf38Q86SI9 138 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 GNB1LQ9BYB4 327 aa9.58□□□□□ -0.88
USP39-217ENST00000491659 IGLV4-69A0A075B6H9 119 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 A0A096LNI7 61 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 PRSS47A8MTI9 375 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 AKR1D1P51857 326 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 OPRPNQ99935 248 aaPredicted RBP9.57□□□□□ -0.88
USP39-217ENST00000491659 PLAC8Q9NZF1 115 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 LINC00474Q9P2X8 69 aa9.57□□□□□ -0.88
USP39-217ENST00000491659 KRTAP29-1A8MX34 341 aaPredicted RBP9.56□□□□□ -0.88
USP39-217ENST00000491659 Q8N8P6 123 aa9.56□□□□□ -0.88
USP39-217ENST00000491659 C7orf33Q8WU49 177 aa9.56□□□□□ -0.88
USP39-217ENST00000491659 CAMK2N2Q96S95 79 aa9.56□□□□□ -0.88
USP39-217ENST00000491659 SPAG11BQ08648 103 aa9.55□□□□□ -0.88
USP39-217ENST00000491659 STPG4Q8N801 248 aa9.55□□□□□ -0.88
USP39-217ENST00000491659 OR10D4PQ8NGN7 298 aa9.55□□□□□ -0.88
USP39-217ENST00000491659 FAM104AQ969W3 186 aa9.55□□□□□ -0.88
USP39-217ENST00000491659 MRPL18Q9H0U6 180 aaKnown RBP9.55□□□□□ -0.88
USP39-217ENST00000491659 PYGO1Q9Y3Y4 419 aa9.55□□□□□ -0.88
USP39-217ENST00000491659 S100A2P29034 98 aa9.54□□□□□ -0.88
USP39-217ENST00000491659 ORMDL2Q53FV1 153 aa9.54□□□□□ -0.88
USP39-217ENST00000491659 Q6ZRU5 148 aa9.54□□□□□ -0.88
USP39-217ENST00000491659 C2orf48Q96LS8 159 aa9.54□□□□□ -0.88
USP39-217ENST00000491659 CYSLTR1Q9Y271 337 aa9.54□□□□□ -0.88
USP39-217ENST00000491659 IGLV4-3A0A075B6K6 122 aa9.53□□□□□ -0.88
USP39-217ENST00000491659 LOC107984640A0A0U1RRK4 108 aa9.53□□□□□ -0.88
USP39-217ENST00000491659 K7EMI3 77 aa9.53□□□□□ -0.88
USP39-217ENST00000491659 ORAOV1Q8WV07 137 aa9.53□□□□□ -0.88
USP39-217ENST00000491659 TMEM141Q96I45 108 aa9.53□□□□□ -0.88
USP39-217ENST00000491659 IGHV3OR16-9A0A0B4J2B5 98 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 OXTP01178 125 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 COA6Q5JTJ3 125 aaKnown RBP9.52□□□□□ -0.89
USP39-217ENST00000491659 C2orf66Q6UXQ4 117 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 Q6ZN92 141 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 C2orf88Q9BSF0 95 aa9.52□□□□□ -0.89
USP39-217ENST00000491659 NXT2Q9NPJ8 142 aaKnown RBP9.52□□□□□ -0.89
USP39-217ENST00000491659 HNRNPA3P51991 378 aaKnown RBP9.51□□□□□ -0.89
USP39-217ENST00000491659 PTTG1IPP53801 180 aa9.51□□□□□ -0.89
USP39-217ENST00000491659 GAGE2BQ13066 116 aa9.5□□□□□ -0.89
USP39-217ENST00000491659 PKHD1L1Q86WI1 4243 aa9.49□□□□□ -0.89
USP39-217ENST00000491659 F8WDY8 70 aa9.49□□□□□ -0.89
USP39-217ENST00000491659 G0S2P27469 103 aa9.49□□□□□ -0.89
USP39-217ENST00000491659 RPL18AQ02543 176 aaKnown RBP9.49□□□□□ -0.89
USP39-217ENST00000491659 HIST3H2BBQ8N257 126 aa9.49□□□□□ -0.89
USP39-217ENST00000491659 NDUFA1O15239 70 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 NPSP0C0P6 89 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 RNF151Q2KHN1 245 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 LINC00242Q5T6M2 205 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 VCX2Q9H322 139 aa9.48□□□□□ -0.89
USP39-217ENST00000491659 HERC1Q15751 4861 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 A0A087WZ39 114 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.47□□□□□ -0.89
USP39-217ENST00000491659 UBE2D1P51668 147 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 PAPPA-AS1Q5QFB9 102 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 BAGE3Q86Y29 109 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 LINC00518Q8N0U6 118 aa9.47□□□□□ -0.89
USP39-217ENST00000491659 MRPL35Q9NZE8 188 aaKnown RBP9.47□□□□□ -0.89
USP39-217ENST00000491659 SMIM6P0DI80 62 aa9.46□□□□□ -0.9
USP39-217ENST00000491659 PRR3P79522 188 aaKnown RBP9.46□□□□□ -0.9
USP39-217ENST00000491659 LINC00173Q6ZV60 143 aa9.46□□□□□ -0.9
USP39-217ENST00000491659 AMELXQ99217 191 aa9.46□□□□□ -0.9
USP39-217ENST00000491659 A0A0J9YXV3 536 aa9.45□□□□□ -0.9
USP39-217ENST00000491659 IGIPA6NJ69 53 aa9.45□□□□□ -0.9
USP39-217ENST00000491659 PDZD11Q5EBL8 140 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms