RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 LGALS9CQ6DKI2 356 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 ZFAND6Q6FIF0 208 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 TMEM101Q96IK0 257 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 AMELXQ99217 191 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 CST9LQ9H4G1 147 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 CDC42SE2Q9NRR3 84 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 LINC00588Q9Y4M8 146 aa4.52□□□□□ -1.69
USP48-208ENST00000479177 DNAH6Q9C0G6 4158 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 A0A087WX48 190 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 SMIM6P0DI80 62 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 CCL18P55774 89 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 TCTAP57738 103 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 JOSD1Q15040 202 aaPredicted RBP4.51□□□□□ -1.69
USP48-208ENST00000479177 PMVKQ15126 192 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 LINC01556Q5JQF7 62 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 DGAT2L7PQ6IED9 249 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 TEX43Q6ZNM6 134 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 ZNF664Q8N3J9 261 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 UPK3BQ9BT76 320 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 VCX2Q9H322 139 aa4.51□□□□□ -1.69
USP48-208ENST00000479177 IGLV4-69A0A075B6H9 119 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 TMEM262E9PQX1 116 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 F8VRH5 84 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 SCGB1D1O95968 90 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 DNAH10OSP0CZ25 163 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 UBE2D1P51668 147 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 PMCHL2Q9BQD1 86 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 C2orf88Q9BSF0 95 aa4.5□□□□□ -1.69
USP48-208ENST00000479177 MRPL35Q9NZE8 188 aaKnown RBP4.5□□□□□ -1.69
USP48-208ENST00000479177 CHTOPQ9Y3Y2 248 aaKnown RBP4.5□□□□□ -1.69
USP48-208ENST00000479177 LYSTQ99698 3801 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 DPM2O94777 84 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 IGHV3-30P01768 117 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 IGHV3-33P01772 117 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 ANGP03950 147 aaKnown RBP4.49□□□□□ -1.69
USP48-208ENST00000479177 IGLC3P0DOY3 106 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 IGHV3-30-3P0DP02 117 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 IGHV3-30-5P0DP03 117 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 PLNP26678 52 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 NFE4Q86UQ8 179 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 PRR34Q9NV39 138 aa4.49□□□□□ -1.69
USP48-208ENST00000479177 TRAV13-1A0A0B4J241 112 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 IGKV3OR2-268A0A0C4DH90 116 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 A0A0J9YXV3 536 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 C11orf86A6NJI1 115 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 SIVA1O15304 175 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 IGKCP01834 107 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 CLPSL2Q6UWE3 100 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 FAM19A3Q7Z5A8 133 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 UBE2DNLQ8IWF7 75 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 ATOH7Q8N100 152 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 LINC00269Q8N2A0 174 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 CHAC1Q9BUX1 264 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 TM2D2Q9BX73 214 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 KLK12Q9UKR0 248 aa4.48□□□□□ -1.69
USP48-208ENST00000479177 IGLV5-45A0A087WSX0 123 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 LINC00959A0A1B0GUT2 108 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 TINCRA0A1B0GVN0 87 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 C3orf84H3BNL1 204 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 ZNF22P17026 224 aaPredicted RBP4.47□□□□□ -1.69
USP48-208ENST00000479177 REG3AQ06141 175 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 CASC10Q5T4H9 136 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 LINC00242Q5T6M2 205 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 ENHOQ6UWT2 76 aa4.47□□□□□ -1.69
USP48-208ENST00000479177 TRAV9-2A0A087WT02 112 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 hDV102S1A0JD36 115 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 PRYO14603 147 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 CCL25O15444 150 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 CRPP02741 224 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 HERVK_113P63121 156 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 SEC11AP67812 179 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 MAJINQ3KP22 176 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 LINC00518Q8N0U6 118 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 C10orf126Q8N4M7 172 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 LINC00469Q8N7U9 141 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 UBE2WQ96B02 151 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 KRTAP1-5Q9BYS1 174 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 Q9H8V8 135 aa4.46□□□□□ -1.7
USP48-208ENST00000479177 IBA57-AS1B1ANH7 110 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 XCL1P47992 114 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 COX6A2Q02221 97 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 SS18Q15532 418 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 MIAQ16674 131 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 STPG4Q8N801 248 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 CHCHD10Q8WYQ3 142 aaPredicted RBP4.45□□□□□ -1.7
USP48-208ENST00000479177 C12orf57Q99622 126 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 VAMP8Q9BV40 100 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 GEMIN7Q9H840 131 aaKnown RBP4.45□□□□□ -1.7
USP48-208ENST00000479177 CDKN2A-AS1Q9UH64 79 aa4.45□□□□□ -1.7
USP48-208ENST00000479177 IGLV10-54A0A075B6I4 117 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 TRAV8-4A0A0B4J246 113 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 IGHV3OR16-9A0A0B4J2B5 98 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 TMEM223A0PJW6 202 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 HSBP1L1C9JCN9 74 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 K7EP13 123 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 HERVK_113P61574 105 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 TMEM170BQ5T4T1 132 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 KRTAP26-1Q6PEX3 210 aa4.44□□□□□ -1.7
USP48-208ENST00000479177 CD164L2Q6UWJ8 174 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms