RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 I3L3M4 83 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 COX7A2LO14548 114 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 S100A4P26447 101 aaKnown RBP3.98□□□□□ -1.77
CLK1-202ENST00000409403 ATP5EP56381 51 aaPredicted RBP3.98□□□□□ -1.77
CLK1-202ENST00000409403 SEC61GP60059 68 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 RUSC1-AS1Q66K80 236 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 DYNAPQ8N1N2 210 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 UPK3BQ9BT76 320 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 PHLDA3Q9Y5J5 127 aa3.98□□□□□ -1.77
CLK1-202ENST00000409403 DYNC2H1Q8NCM8 4307 aaKnown RBP3.98□□□□□ -1.77
CLK1-202ENST00000409403 IGLV3-9A0A075B6K5 115 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 TRAV21A0A0B4J279 112 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 IGHV1-18A0A0C4DH31 117 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 FAM236DA0A1B0GTK5 79 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 CCL24O00175 119 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 NDUFB3O43676 98 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 CDK2AP2O75956 126 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 IGHG2P01859 326 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 MGPP08493 103 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 FAM236CP0DP71 79 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 LINC01547P58512 204 aaPredicted RBP3.97□□□□□ -1.77
CLK1-202ENST00000409403 CIRBPQ14011 172 aaKnown RBP3.97□□□□□ -1.77
CLK1-202ENST00000409403 NSUN5P1Q3KNT7 163 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 SPINK14Q6IE38 97 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 C18orf65Q6ZTR6 163 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 C14orf178Q8N769 122 aaPredicted RBP3.97□□□□□ -1.77
CLK1-202ENST00000409403 SMCR5Q8TEV8 140 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 CLEC2BQ92478 149 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 FAM19A4Q96LR4 140 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 DSCR8Q96T75 97 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 FREM1Q5H8C1 2179 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 TENM2Q9NT68 2774 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 SMIM26A0A096LP01 95 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 TRBV6-5A0A0K0K1A5 114 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 ZNRD1Q9P1U0 126 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 CTSZQ9UBR2 303 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 ZNF580Q9UK33 172 aa3.97□□□□□ -1.77
CLK1-202ENST00000409403 IGHV1-3A0A0C4DH29 117 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 TRBV27A0A0K0K1C4 114 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 EPM2AB3EWF7 344 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 LY6LH3BQJ8 138 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 NXPH4O95158 308 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 POLR2KP53803 58 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 DAZ2Q13117 558 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 DAZ4Q86SG3 579 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 DEFB108BQ8NET1 73 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 RPL39LQ96EH5 51 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 LINC00477Q96M19 166 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 TMEM243Q9BU79 118 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 DAZ1Q9NQZ3 744 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 DAZ3Q9NR90 486 aaKnown RBP3.96□□□□□ -1.78
CLK1-202ENST00000409403 NOTCH3Q9UM47 2321 aa3.96□□□□□ -1.78
CLK1-202ENST00000409403 IGLV11-55A0A075B6I3 123 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1BA6NDE4 496 aaKnown RBP3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1EA6NEQ0 496 aaKnown RBP3.95□□□□□ -1.78
CLK1-202ENST00000409403 KNCNA6PVL3 124 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1DP0C7P1 496 aaKnown RBP3.95□□□□□ -1.78
CLK1-202ENST00000409403 BAALC-AS2P0C853 105 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1A1P0DJD3 496 aaKnown RBP3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1CP0DJD4 496 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 IGHV1-8P0DP01 117 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 CCL3L1P16619 93 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 RBMY1FQ15415 496 aaKnown RBP3.95□□□□□ -1.78
CLK1-202ENST00000409403 GPHB5Q86YW7 130 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 CNEP1R1Q8N9A8 125 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 EEF1AKMT3Q96AZ1 226 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 LITAFQ99732 161 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 NDUFA12Q9UI09 145 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 COL7A1Q02388 2944 aa3.95□□□□□ -1.78
CLK1-202ENST00000409403 IGHV1-58A0A0C4DH39 117 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 OXTP01178 125 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 IGHV1-46P01743 117 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 APELAP0DMC3 54 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 IGHV3-30-3P0DP02 117 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 C1orf195Q5TG92 126 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 TMEM86BQ8N661 226 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 LAMTOR3Q9UHA4 124 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 SLC25A15Q9Y619 301 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 SMAD5-AS1Q9Y6J3 95 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 IGHV3-72A0A0B4J1Y9 119 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 NBR2O15453 112 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 NDUFC1O43677 76 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 RPL35AP18077 110 aaKnown RBP3.94□□□□□ -1.78
CLK1-202ENST00000409403 RNASE4P34096 147 aaKnown RBP3.94□□□□□ -1.78
CLK1-202ENST00000409403 MDS2Q8NDY4 140 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 NUP37Q8NFH4 326 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 SPRR3Q9UBC9 169 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 KAAG1Q9UBP8 84 aa3.94□□□□□ -1.78
CLK1-202ENST00000409403 SACSQ9NZJ4 4579 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 DSCAMO60469 2012 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 TRBV10-3A0A0K0K1G6 114 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 A0A1W2PPR1 153 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 M0R1B8 84 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 IGLV1-47P01700 117 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 LY6G5BQ8NDX9 201 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 C10orf105Q8TEF2 133 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 HES7Q9BYE0 225 aa3.93□□□□□ -1.78
CLK1-202ENST00000409403 IGHV3OR16-10A0A075B7F0 116 aa3.92□□□□□ -1.78
CLK1-202ENST00000409403 BUB1B-PAK6H3BSN5 160 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms