RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 HIST1H2BBP33778 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BDP58876 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BCP62807 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 RPL39P62891 51 aaKnown RBP10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST2H2BEQ16778 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.24□□□□□ -0.77
CUX2-202ENST00000397643 C2orf66Q6UXQ4 117 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BHQ93079 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 URB1-AS1Q96HZ7 61 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BNQ99877 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 HIST1H2BMQ99879 126 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 TIMM21Q9BVV7 248 aa10.24□□□□□ -0.77
CUX2-202ENST00000397643 MIAQ16674 131 aa10.23□□□□□ -0.77
CUX2-202ENST00000397643 SPANXA1Q9NS26 97 aa10.23□□□□□ -0.77
CUX2-202ENST00000397643 UBE2D4Q9Y2X8 147 aa10.23□□□□□ -0.77
CUX2-202ENST00000397643 CSDC2Q9Y534 153 aaKnown RBP10.23□□□□□ -0.77
CUX2-202ENST00000397643 IGLV4-60A0A075B6I1 120 aa10.22□□□□□ -0.77
CUX2-202ENST00000397643 ODF1Q14990 250 aa10.22□□□□□ -0.77
CUX2-202ENST00000397643 TOMM6Q96B49 74 aa10.22□□□□□ -0.77
CUX2-202ENST00000397643 PRR34Q9NV39 138 aa10.22□□□□□ -0.77
CUX2-202ENST00000397643 HSBP1O75506 76 aa10.21□□□□□ -0.77
CUX2-202ENST00000397643 PYGO1Q9Y3Y4 419 aa10.21□□□□□ -0.77
CUX2-202ENST00000397643 SERF1AO75920 110 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 HBDP02042 147 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 CNBPP62633 177 aaKnown RBP10.2□□□□□ -0.78
CUX2-202ENST00000397643 CLPSL2Q6UWE3 100 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 LINC00269Q8N2A0 174 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 ZNF664Q8N3J9 261 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 CDC42SE2Q9NRR3 84 aa10.2□□□□□ -0.78
CUX2-202ENST00000397643 NPSP0C0P6 89 aa10.19□□□□□ -0.78
CUX2-202ENST00000397643 MRPS36P82909 103 aaKnown RBP10.19□□□□□ -0.78
CUX2-202ENST00000397643 SCGB3A1Q96QR1 104 aa10.19□□□□□ -0.78
CUX2-202ENST00000397643 A0A087WYN8 130 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 CHTF8P0CG12 524 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 REG3AQ06141 175 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 PMCHL1Q16048 86 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 ERASQ7Z444 233 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 SPACA4Q8TDM5 124 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 TMEM141Q96I45 108 aa10.18□□□□□ -0.78
CUX2-202ENST00000397643 A0A096LNJ9 63 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 IGIPA6NJ69 53 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 SLPIP03973 132 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 NDUFA6P56556 154 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 PAPPA-AS1Q5QFB9 102 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 Q6ZN92 141 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 Q6ZUT4 128 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 LINC01600Q96MT4 127 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 TIMM17AQ99595 171 aa10.17□□□□□ -0.78
CUX2-202ENST00000397643 IGLV4-3A0A075B6K6 122 aa10.16□□□□□ -0.78
CUX2-202ENST00000397643 LINC00310P59036 64 aa10.16□□□□□ -0.78
CUX2-202ENST00000397643 OPRPNQ99935 248 aaPredicted RBP10.16□□□□□ -0.78
CUX2-202ENST00000397643 TRAV8-4A0A0B4J246 113 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 IGKV3OR2-268A0A0C4DH90 116 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.15□□□□□ -0.78
CUX2-202ENST00000397643 NUPR1O60356 82 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 PDZD11Q5EBL8 140 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 RNASE13Q5GAN3 156 aaKnown RBP10.15□□□□□ -0.78
CUX2-202ENST00000397643 COA6Q5JTJ3 125 aaKnown RBP10.15□□□□□ -0.78
CUX2-202ENST00000397643 FAM19A2Q8N3H0 131 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 VCX2Q9H322 139 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 PLAC8Q9NZF1 115 aa10.15□□□□□ -0.78
CUX2-202ENST00000397643 IGHV3-64A0A075B6Q5 118 aa10.14□□□□□ -0.79
CUX2-202ENST00000397643 hDV102S1A0JD36 115 aa10.14□□□□□ -0.79
CUX2-202ENST00000397643 ATP5LO75964 103 aa10.14□□□□□ -0.79
CUX2-202ENST00000397643 TEX43Q6ZNM6 134 aa10.14□□□□□ -0.79
CUX2-202ENST00000397643 IGLV10-54A0A075B6I4 117 aa10.13□□□□□ -0.79
CUX2-202ENST00000397643 IFITM10A6NMD0 228 aa10.13□□□□□ -0.79
CUX2-202ENST00000397643 SS18Q15532 418 aa10.13□□□□□ -0.79
CUX2-202ENST00000397643 FAM104AQ969W3 186 aa10.13□□□□□ -0.79
CUX2-202ENST00000397643 C2orf88Q9BSF0 95 aa10.13□□□□□ -0.79
CUX2-202ENST00000397643 LINC00959A0A1B0GUT2 108 aa10.12□□□□□ -0.79
CUX2-202ENST00000397643 CCL25O15444 150 aa10.12□□□□□ -0.79
CUX2-202ENST00000397643 S100A6P06703 90 aa10.12□□□□□ -0.79
CUX2-202ENST00000397643 TRAV13-1A0A0B4J241 112 aa10.11□□□□□ -0.79
CUX2-202ENST00000397643 LEPROTL1O95214 131 aa10.11□□□□□ -0.79
CUX2-202ENST00000397643 PRR3P79522 188 aaKnown RBP10.11□□□□□ -0.79
CUX2-202ENST00000397643 AMELXQ99217 191 aa10.11□□□□□ -0.79
CUX2-202ENST00000397643 HSPB8Q9UJY1 196 aa10.11□□□□□ -0.79
CUX2-202ENST00000397643 A0A0J9YXV3 536 aa10.1□□□□□ -0.79
CUX2-202ENST00000397643 KRTAP10-8P60410 259 aa10.1□□□□□ -0.79
CUX2-202ENST00000397643 FABP4P15090 132 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 PMVKQ15126 192 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 LINC00173Q6ZV60 143 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 C7orf33Q8WU49 177 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 CHCHD10Q8WYQ3 142 aaPredicted RBP10.09□□□□□ -0.79
CUX2-202ENST00000397643 IFI27L1Q96BM0 104 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 DPH3Q96FX2 82 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 LPAP08519 4548 aa10.09□□□□□ -0.79
CUX2-202ENST00000397643 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.08□□□□□ -0.8
CUX2-202ENST00000397643 ZC2HC1BQ5TFG8 222 aa10.08□□□□□ -0.8
CUX2-202ENST00000397643 PACRGQ96M98 296 aaPredicted RBP10.08□□□□□ -0.8
CUX2-202ENST00000397643 CST9LQ9H4G1 147 aa10.08□□□□□ -0.8
CUX2-202ENST00000397643 GAGE12HA6NDE8 117 aa10.07□□□□□ -0.8
CUX2-202ENST00000397643 XCL1P47992 114 aa10.07□□□□□ -0.8
CUX2-202ENST00000397643 UBE2D1P51668 147 aa10.07□□□□□ -0.8
CUX2-202ENST00000397643 SEC11AP67812 179 aa10.06□□□□□ -0.8
CUX2-202ENST00000397643 COX6A2Q02221 97 aa10.06□□□□□ -0.8
CUX2-202ENST00000397643 CD164L2Q6UWJ8 174 aa10.06□□□□□ -0.8
CUX2-202ENST00000397643 C15orf56Q8N910 161 aa10.06□□□□□ -0.8
CUX2-202ENST00000397643 S100A2P29034 98 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms