RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 C11orf71Q6IPW1 123 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 LTBP2Q14767 1821 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 PLAC8L1A1L4L8 177 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 LINC00310P59036 64 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 POM121L12Q8N7R1 296 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 LIMD2Q9BT23 127 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 DSCAMO60469 2012 aa7.56□□□□□ -1.2
LIMCH1-203ENST00000396595 FAM19A1Q7Z5A9 133 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 C19orf84I3L1E1 186 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 SPAG11AQ6PDA7 123 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 CD164L2Q6UWJ8 174 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 Q6ZS46 218 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 LINC00208Q96KT6 92 aa7.55□□□□□ -1.2
LIMCH1-203ENST00000396595 TANC2Q9HCD6 1990 aa7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 RPS28P62857 69 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 SYCNQ0VAF6 134 aa7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 KIR2DL5BQ8NHK3 375 aa7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 Q6ZQY7 126 aa7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 Q6ZSV7 163 aa7.54□□□□□ -1.2
LIMCH1-203ENST00000396595 DEFB131BA0A096LNP1 70 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 UBE2D1P51668 147 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 IL17DQ8TAD2 202 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 GAS8-AS1O95177 125 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 PSMG3-AS1Q96PY0 264 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 CRYGAP11844 174 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 SMIM11BQ8TCY0 68 aa7.53□□□□□ -1.2
LIMCH1-203ENST00000396595 MUC7Q8TAX7 377 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 NUP210LQ5VU65 1888 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 C10orf99Q6UWK7 81 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 IGIPA6NJ69 53 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 MRGPRG-AS1Q2M3A8 158 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 URB1-AS1Q96HZ7 61 aa7.52□□□□□ -1.21
LIMCH1-203ENST00000396595 A0A096LNI7 61 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 M0R378 163 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 LINC00959A0A1B0GUT2 108 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 BBC3Q96PG8 261 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 NAV2Q8IVL1 2488 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 DCANP1Q8TF63 244 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 DHRS4-AS1Q9P1J3 65 aa7.51□□□□□ -1.21
LIMCH1-203ENST00000396595 HIVEP3Q5T1R4 2406 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 TMEM254Q8TBM7 123 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 A0A087WZ39 114 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 C8orf87E5RJ46 101 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 IGLV1-40P01703 118 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 HILS1P60008 231 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 COX17Q14061 63 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 SPINT4Q6UDR6 99 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 ZNF702PQ9H963 129 aa7.5□□□□□ -1.21
LIMCH1-203ENST00000396595 ARHGAP32A7KAX9 2087 aa7.49□□□□□ -1.21
LIMCH1-203ENST00000396595 F8WDY8 70 aa7.49□□□□□ -1.21
LIMCH1-203ENST00000396595 LELP1Q5T871 98 aa7.49□□□□□ -1.21
LIMCH1-203ENST00000396595 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-203ENST00000396595 Q8IZM0 81 aa7.49□□□□□ -1.21
LIMCH1-203ENST00000396595 LINC00482Q8N8I6 264 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 COL4A4P53420 1690 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 UBE2D3P61077 147 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 CDC42SE2Q9NRR3 84 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 CD164Q04900 197 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 Q6ZVQ6 151 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 Q8N3U1 123 aa7.48□□□□□ -1.21
LIMCH1-203ENST00000396595 CCDC168Q8NDH2 2452 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 IGLV4-69A0A075B6H9 119 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 TRBV10-3A0A0K0K1G6 114 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 MYO9AB2RTY4 2548 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 ZNF73O43830 326 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 LOC100131303A0A0U1RQF7 123 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 NTM-AS1Q6ZSK4 140 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 MDFIQ99750 246 aa7.47□□□□□ -1.21
LIMCH1-203ENST00000396595 IGKV2-28A0A075B6P5 120 aa7.46□□□□□ -1.22
LIMCH1-203ENST00000396595 IGKV2D-28P01615 120 aa7.46□□□□□ -1.22
LIMCH1-203ENST00000396595 LINC00242Q5T6M2 205 aa7.46□□□□□ -1.22
LIMCH1-203ENST00000396595 ATG2AQ2TAZ0 1938 aa7.46□□□□□ -1.22
LIMCH1-203ENST00000396595 COX8CQ7Z4L0 72 aa7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 TRAV10A0A0B4J240 114 aa7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 hDV103S1A0JD37 113 aa7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 PCOTHQ58A44 107 aa7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 CDIP1Q9H305 208 aa7.45□□□□□ -1.22
LIMCH1-203ENST00000396595 CRIP2P52943 208 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-203ENST00000396595 DOPEY1Q5JWR5 2465 aa7.44□□□□□ -1.22
LIMCH1-203ENST00000396595 RPL28P46779 137 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-203ENST00000396595 KPRPQ5T749 579 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-203ENST00000396595 SMIM1B2RUZ4 78 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 H0Y9P7 68 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 LINC01006Q8NI28 216 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 ZNF706Q9Y5V0 76 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 C10orf142B7Z368 130 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 EP400Q96L91 3159 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 PRM2P04554 102 aa7.43□□□□□ -1.22
LIMCH1-203ENST00000396595 ABCA2Q9BZC7 2435 aa7.42□□□□□ -1.22
LIMCH1-203ENST00000396595 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-203ENST00000396595 SPINK6Q6UWN8 80 aa7.42□□□□□ -1.22
LIMCH1-203ENST00000396595 EML5Q05BV3 1969 aa7.42□□□□□ -1.22
LIMCH1-203ENST00000396595 C18orf65Q6ZTR6 163 aa7.42□□□□□ -1.22
LIMCH1-203ENST00000396595 CYSRT1A8MQ03 144 aa7.41□□□□□ -1.22
LIMCH1-203ENST00000396595 TSPEAR-AS2P59090 65 aa7.41□□□□□ -1.22
LIMCH1-203ENST00000396595 MUC22E2RYF6 1773 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-203ENST00000396595 A0A096LNJ9 63 aa7.41□□□□□ -1.22
LIMCH1-203ENST00000396595 INAFM1C9JVW0 142 aa7.41□□□□□ -1.22
LIMCH1-203ENST00000396595 CHCHD7Q9BUK0 85 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms