RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 HBBP68871 147 aa8.5□□□□□ -1.05
PTCH1-202ENST00000375271 PACRGQ96M98 296 aaPredicted RBP8.5□□□□□ -1.05
PTCH1-202ENST00000375271 KRTAP9-2Q9BYQ4 174 aa8.5□□□□□ -1.05
PTCH1-202ENST00000375271 TLX1NBP0CAT3 122 aa8.49□□□□□ -1.05
PTCH1-202ENST00000375271 SMIM7Q9BQ49 75 aa8.49□□□□□ -1.05
PTCH1-202ENST00000375271 SMDT1Q9H4I9 107 aa8.49□□□□□ -1.05
PTCH1-202ENST00000375271 CARHSP1Q9Y2V2 147 aaKnown RBP8.49□□□□□ -1.05
PTCH1-202ENST00000375271 TSPAN13O95857 204 aa8.48□□□□□ -1.05
PTCH1-202ENST00000375271 UNQ6190/PRO20217Q6UXQ8 127 aa8.48□□□□□ -1.05
PTCH1-202ENST00000375271 SPANXA1Q9NS26 97 aa8.48□□□□□ -1.05
PTCH1-202ENST00000375271 C6orf48Q9UBA6 75 aa8.48□□□□□ -1.05
PTCH1-202ENST00000375271 MUC2Q02817 5179 aa8.47□□□□□ -1.05
PTCH1-202ENST00000375271 KRTAP1-4P0C5Y4 121 aa8.47□□□□□ -1.05
PTCH1-202ENST00000375271 BLOC1S1P78537 153 aa8.47□□□□□ -1.05
PTCH1-202ENST00000375271 EIF5A2Q9GZV4 153 aaKnown RBP8.47□□□□□ -1.05
PTCH1-202ENST00000375271 CKS2P33552 79 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 RPL39P62891 51 aaKnown RBP8.46□□□□□ -1.06
PTCH1-202ENST00000375271 C10orf25Q5T742 122 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 KRTAP11-1Q8IUC1 163 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 NRACQ8N912 160 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 C20orf78Q9BR46 151 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 OSTCQ9NRP0 149 aa8.46□□□□□ -1.06
PTCH1-202ENST00000375271 IGHV3OR16-9A0A0B4J2B5 98 aa8.45□□□□□ -1.06
PTCH1-202ENST00000375271 TRBV30A0A0K0K1B3 111 aa8.45□□□□□ -1.06
PTCH1-202ENST00000375271 ZNF727A8MUV8 499 aa8.45□□□□□ -1.06
PTCH1-202ENST00000375271 LINC01551Q86U37 167 aa8.45□□□□□ -1.06
PTCH1-202ENST00000375271 NAT8BQ9UHF3 227 aa8.45□□□□□ -1.06
PTCH1-202ENST00000375271 LINC00862A6NCI5 91 aa8.44□□□□□ -1.06
PTCH1-202ENST00000375271 NDUFC2-KCTD14E9PQ53 114 aa8.44□□□□□ -1.06
PTCH1-202ENST00000375271 ZNF861PO60384 105 aa8.44□□□□□ -1.06
PTCH1-202ENST00000375271 PRSS2P07478 247 aa8.44□□□□□ -1.06
PTCH1-202ENST00000375271 IFI27P40305 119 aaPredicted RBP8.44□□□□□ -1.06
PTCH1-202ENST00000375271 NUPR1O60356 82 aa8.43□□□□□ -1.06
PTCH1-202ENST00000375271 RAB5AP20339 215 aa8.43□□□□□ -1.06
PTCH1-202ENST00000375271 MRPS36P82909 103 aaKnown RBP8.43□□□□□ -1.06
PTCH1-202ENST00000375271 MRPL51Q4U2R6 128 aaKnown RBP8.43□□□□□ -1.06
PTCH1-202ENST00000375271 LBHQ53QV2 105 aaPredicted RBP8.43□□□□□ -1.06
PTCH1-202ENST00000375271 FAM104BQ5XKR9 115 aa8.42□□□□□ -1.06
PTCH1-202ENST00000375271 SMIM2Q9BVW6 85 aa8.42□□□□□ -1.06
PTCH1-202ENST00000375271 A0A1B0GW15 77 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 TNFRSF6BO95407 300 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 S100A8P05109 93 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 RPL28P46779 137 aaKnown RBP8.41□□□□□ -1.06
PTCH1-202ENST00000375271 CKS1BP61024 79 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 TYMSOSQ8TAI1 123 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 C2orf88Q9BSF0 95 aa8.41□□□□□ -1.06
PTCH1-202ENST00000375271 F8W036 122 aa8.4□□□□□ -1.06
PTCH1-202ENST00000375271 RPL32P62910 135 aaKnown RBP8.4□□□□□ -1.06
PTCH1-202ENST00000375271 C2orf82Q6UX34 121 aa8.4□□□□□ -1.06
PTCH1-202ENST00000375271 ALKAL2Q6UX46 152 aa8.4□□□□□ -1.06
PTCH1-202ENST00000375271 TOMM7Q9P0U1 55 aa8.4□□□□□ -1.06
PTCH1-202ENST00000375271 TRBV24-1A0A075B6N3 115 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 D6R8Y8 96 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 CRYGAP11844 174 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 Q6ZN92 141 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 TEX43Q6ZNM6 134 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 V9GYV3 84 aa8.39□□□□□ -1.07
PTCH1-202ENST00000375271 ADIRFQ15847 76 aa8.38□□□□□ -1.07
PTCH1-202ENST00000375271 C9orf129Q5T035 196 aaKnown RBP8.38□□□□□ -1.07
PTCH1-202ENST00000375271 TCTE3Q8IZS6 198 aa8.38□□□□□ -1.07
PTCH1-202ENST00000375271 TMEM141Q96I45 108 aa8.38□□□□□ -1.07
PTCH1-202ENST00000375271 CTDSP1Q9GZU7 261 aa8.38□□□□□ -1.07
PTCH1-202ENST00000375271 KIAA0087Q14695 138 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 FAM74A3Q4VXF1 159 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 C6orf226Q5I0X4 101 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 LINC00469Q8N7U9 141 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 CDIP1Q9H305 208 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 C22orf24Q9Y442 160 aa8.37□□□□□ -1.07
PTCH1-202ENST00000375271 PPBPP02775 128 aa8.36□□□□□ -1.07
PTCH1-202ENST00000375271 KRTAP7-1Q8IUC3 87 aa8.36□□□□□ -1.07
PTCH1-202ENST00000375271 LINC00242Q5T6M2 205 aa8.35□□□□□ -1.07
PTCH1-202ENST00000375271 XAGE1AQ9HD64 81 aa8.35□□□□□ -1.07
PTCH1-202ENST00000375271 KRTAP9-6A0A140TA67 174 aa8.34□□□□□ -1.07
PTCH1-202ENST00000375271 BCE1O60756 84 aa8.34□□□□□ -1.07
PTCH1-202ENST00000375271 NPYP01303 97 aa8.34□□□□□ -1.07
PTCH1-202ENST00000375271 MRPL54Q6P161 138 aaKnown RBP8.34□□□□□ -1.07
PTCH1-202ENST00000375271 LINC01561Q8N1V8 128 aa8.34□□□□□ -1.07
PTCH1-202ENST00000375271 ALKBH7Q9BT30 221 aaPredicted RBP8.34□□□□□ -1.07
PTCH1-202ENST00000375271 PYGO1Q9Y3Y4 419 aa8.34□□□□□ -1.07
PTCH1-202ENST00000375271 IGLV4-3A0A075B6K6 122 aa8.33□□□□□ -1.08
PTCH1-202ENST00000375271 A0A087X002 238 aa8.33□□□□□ -1.08
PTCH1-202ENST00000375271 SMIM27A0A1W2PRY6 76 aa8.33□□□□□ -1.08
PTCH1-202ENST00000375271 SRP19P09132 144 aaKnown RBP8.33□□□□□ -1.08
PTCH1-202ENST00000375271 MRPL55Q7Z7F7 128 aaKnown RBP8.33□□□□□ -1.08
PTCH1-202ENST00000375271 ORMDL3Q8N138 153 aa8.33□□□□□ -1.08
PTCH1-202ENST00000375271 FAM104AQ969W3 186 aa8.33□□□□□ -1.08
PTCH1-202ENST00000375271 UBE2AP49459 152 aa8.32□□□□□ -1.08
PTCH1-202ENST00000375271 RPL23P62829 140 aaKnown RBP8.32□□□□□ -1.08
PTCH1-202ENST00000375271 VCX2Q9H322 139 aa8.32□□□□□ -1.08
PTCH1-202ENST00000375271 TP73-AS1Q9UF72 201 aa8.32□□□□□ -1.08
PTCH1-202ENST00000375271 TMEM136Q6ZRR5 245 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 Q8IZM0 81 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 PRELID3AQ96N28 172 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 RETNLBQ9BQ08 111 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 NAT8Q9UHE5 227 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 CYSLTR1Q9Y271 337 aa8.31□□□□□ -1.08
PTCH1-202ENST00000375271 F8VRH5 84 aa8.3□□□□□ -1.08
PTCH1-202ENST00000375271 SEC11AP67812 179 aa8.3□□□□□ -1.08
PTCH1-202ENST00000375271 LINC00304Q8N9R0 145 aa8.3□□□□□ -1.08
PTCH1-202ENST00000375271 FAT4Q6V0I7 4981 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms