RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 LINC00337Q8N6G1 96 aa12.85□□□□□ -0.35
COL27A1-201ENST00000356083 COL4A4P53420 1690 aaPredicted RBP12.84□□□□□ -0.35
COL27A1-201ENST00000356083 ZNF80P51504 273 aaPredicted RBP12.84□□□□□ -0.35
COL27A1-201ENST00000356083 LINC00474Q9P2X8 69 aa12.84□□□□□ -0.35
COL27A1-201ENST00000356083 M0QXV9 152 aa12.84□□□□□ -0.35
COL27A1-201ENST00000356083 MT-ATP8P03928 68 aa12.83□□□□□ -0.35
COL27A1-201ENST00000356083 UQCRQO14949 82 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 SBSPONQ8IVN8 264 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 DHRS4-AS1Q9P1J3 65 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 HIGD1BQ9P298 99 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 C19orf71A6NCJ1 209 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 DEFB116Q30KQ4 102 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 FRMD6-AS1P0C7T7 363 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 CCDC140Q96MF4 163 aa12.83□□□□□ -0.36
COL27A1-201ENST00000356083 IBA57-AS1B1ANH7 110 aa12.82□□□□□ -0.36
COL27A1-201ENST00000356083 PCOTHQ58A44 107 aa12.82□□□□□ -0.36
COL27A1-201ENST00000356083 SERTAD4-AS1Q5TG53 156 aa12.82□□□□□ -0.36
COL27A1-201ENST00000356083 TNFRSF13BO14836 293 aaPredicted RBP12.81□□□□□ -0.36
COL27A1-201ENST00000356083 COA6Q5JTJ3 125 aaKnown RBP12.81□□□□□ -0.36
COL27A1-201ENST00000356083 Q6ZSR3 168 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 LINC00308Q8TCZ7 52 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 PMAIP1Q13794 54 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 RPL28P46779 137 aaKnown RBP12.81□□□□□ -0.36
COL27A1-201ENST00000356083 C1orf137Q5JT78 98 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 CENPFP49454 3210 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 TRIAP1O43715 76 aa12.81□□□□□ -0.36
COL27A1-201ENST00000356083 IGLV4-3A0A075B6K6 122 aa12.8□□□□□ -0.36
COL27A1-201ENST00000356083 M0R378 163 aa12.8□□□□□ -0.36
COL27A1-201ENST00000356083 Q6ZSV7 163 aa12.8□□□□□ -0.36
COL27A1-201ENST00000356083 H7C423 109 aa12.8□□□□□ -0.36
COL27A1-201ENST00000356083 LINC00208Q96KT6 92 aa12.79□□□□□ -0.36
COL27A1-201ENST00000356083 RBX1P62877 108 aa12.79□□□□□ -0.36
COL27A1-201ENST00000356083 RNASE8Q8TDE3 154 aaKnown RBP12.79□□□□□ -0.36
COL27A1-201ENST00000356083 C10orf91Q5T1B1 145 aa12.79□□□□□ -0.36
COL27A1-201ENST00000356083 PRLHP81277 87 aa12.79□□□□□ -0.36
COL27A1-201ENST00000356083 BRI3O95415 125 aa12.78□□□□□ -0.36
COL27A1-201ENST00000356083 USP9XQ93008 2570 aaPredicted RBP12.78□□□□□ -0.36
COL27A1-201ENST00000356083 LRRC75A-AS1Q8N1F1 130 aa12.78□□□□□ -0.36
COL27A1-201ENST00000356083 SMIM11BQ8TCY0 68 aa12.78□□□□□ -0.36
COL27A1-201ENST00000356083 LINC01547P58512 204 aaPredicted RBP12.78□□□□□ -0.36
COL27A1-201ENST00000356083 IGFL2Q6UWQ7 119 aa12.77□□□□□ -0.36
COL27A1-201ENST00000356083 SOSTDC1Q6X4U4 206 aa12.77□□□□□ -0.37
COL27A1-201ENST00000356083 IGLV1-47P01700 117 aa12.77□□□□□ -0.37
COL27A1-201ENST00000356083 IGLV3-1P01715 115 aa12.77□□□□□ -0.37
COL27A1-201ENST00000356083 LST1O00453 97 aa12.76□□□□□ -0.37
COL27A1-201ENST00000356083 K7EQG2 157 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 LELP1Q5T871 98 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 C6orf223Q8N319 242 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 NDUFC1O43677 76 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 BEAN1Q3B7T3 259 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 CD164L2Q6UWJ8 174 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 Q8NA96 180 aa12.75□□□□□ -0.37
COL27A1-201ENST00000356083 SPRY4Q9C004 299 aa12.74□□□□□ -0.37
COL27A1-201ENST00000356083 C9orf116Q5BN46 136 aaPredicted RBP12.74□□□□□ -0.37
COL27A1-201ENST00000356083 LMO4P61968 165 aa12.74□□□□□ -0.37
COL27A1-201ENST00000356083 IGKV2D-30A0A075B6S6 120 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 IGKV2-30P06310 120 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 REG3GQ6UW15 175 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 SPTBN4Q9H254 2564 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 NCOR2Q9Y618 2525 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 EBI3Q14213 229 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 PSPHP1O15172 72 aa12.73□□□□□ -0.37
COL27A1-201ENST00000356083 A0A1W2PNU3 283 aaPredicted RBP12.72□□□□□ -0.37
COL27A1-201ENST00000356083 A0A1B0GXF2 115 aa12.72□□□□□ -0.37
COL27A1-201ENST00000356083 CRIP2P52943 208 aaPredicted RBP12.71□□□□□ -0.37
COL27A1-201ENST00000356083 NAV2Q8IVL1 2488 aa12.71□□□□□ -0.38
COL27A1-201ENST00000356083 TRBV6-4A0A1B0GX49 114 aa12.7□□□□□ -0.38
COL27A1-201ENST00000356083 C1orf195Q5TG92 126 aa12.7□□□□□ -0.38
COL27A1-201ENST00000356083 LINC00959A0A1B0GUT2 108 aa12.7□□□□□ -0.38
COL27A1-201ENST00000356083 PRR3P79522 188 aaKnown RBP12.7□□□□□ -0.38
COL27A1-201ENST00000356083 C2orf48Q96LS8 159 aa12.7□□□□□ -0.38
COL27A1-201ENST00000356083 ZNF22P17026 224 aaPredicted RBP12.69□□□□□ -0.38
COL27A1-201ENST00000356083 M0QY20 66 aa12.69□□□□□ -0.38
COL27A1-201ENST00000356083 CRYGAP11844 174 aa12.69□□□□□ -0.38
COL27A1-201ENST00000356083 ATP5EP2Q5VTU8 51 aa12.69□□□□□ -0.38
COL27A1-201ENST00000356083 CYSRT1A8MQ03 144 aa12.68□□□□□ -0.38
COL27A1-201ENST00000356083 ATP5EP56381 51 aaPredicted RBP12.68□□□□□ -0.38
COL27A1-201ENST00000356083 CSDC2Q9Y534 153 aaKnown RBP12.68□□□□□ -0.38
COL27A1-201ENST00000356083 LINC01006Q8NI28 216 aa12.68□□□□□ -0.38
COL27A1-201ENST00000356083 ODF3BA8MYP8 253 aa12.68□□□□□ -0.38
COL27A1-201ENST00000356083 XGP55808 180 aa12.68□□□□□ -0.38
COL27A1-201ENST00000356083 C7orf65Q6ZTY9 151 aa12.68□□□□□ -0.38
COL27A1-201ENST00000356083 NDUFA7O95182 113 aa12.67□□□□□ -0.38
COL27A1-201ENST00000356083 MRPS12O15235 138 aaKnown RBP12.67□□□□□ -0.38
COL27A1-201ENST00000356083 ZNF73O43830 326 aaPredicted RBP12.67□□□□□ -0.38
COL27A1-201ENST00000356083 MAPKAPK5-AS1Q8N8E1 139 aa12.66□□□□□ -0.38
COL27A1-201ENST00000356083 ODF3Q96PU9 254 aa12.66□□□□□ -0.38
COL27A1-201ENST00000356083 C1orf134Q5TEV5 83 aa12.66□□□□□ -0.38
COL27A1-201ENST00000356083 TP73-AS1Q9UF72 201 aa12.66□□□□□ -0.38
COL27A1-201ENST00000356083 USP24Q9UPU5 2620 aa12.66□□□□□ -0.38
COL27A1-201ENST00000356083 PYGO1Q9Y3Y4 419 aa12.65□□□□□ -0.38
COL27A1-201ENST00000356083 MSMPQ1L6U9 139 aa12.64□□□□□ -0.39
COL27A1-201ENST00000356083 Q6ZS46 218 aa12.64□□□□□ -0.39
COL27A1-201ENST00000356083 U3KQK5 164 aa12.64□□□□□ -0.39
COL27A1-201ENST00000356083 ANKRD17O75179 2603 aaKnown RBP12.64□□□□□ -0.39
COL27A1-201ENST00000356083 COX6A2Q02221 97 aa12.64□□□□□ -0.39
COL27A1-201ENST00000356083 Q9BRP9 147 aa12.63□□□□□ -0.39
COL27A1-201ENST00000356083 IGF2RP11717 2491 aa12.63□□□□□ -0.39
COL27A1-201ENST00000356083 UNQ6190/PRO20217Q6UXQ8 127 aa12.63□□□□□ -0.39
COL27A1-201ENST00000356083 SPACA4Q8TDM5 124 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms