RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TRIAP1O43715 76 aa15.42■□□□□ 0.06
SHMT1-202ENST00000352886 TRBV30A0A0K0K1B3 111 aa15.41■□□□□ 0.06
SHMT1-202ENST00000352886 PF4P02776 101 aa15.41■□□□□ 0.06
SHMT1-202ENST00000352886 C9JAW5 83 aa15.41■□□□□ 0.06
SHMT1-202ENST00000352886 CIRBPQ14011 172 aaKnown RBP15.41■□□□□ 0.06
SHMT1-202ENST00000352886 ZNF625Q96I27 306 aaPredicted RBP15.41■□□□□ 0.06
SHMT1-202ENST00000352886 MT-ATP8P03928 68 aa15.4■□□□□ 0.06
SHMT1-202ENST00000352886 IFITM1P13164 125 aa15.4■□□□□ 0.06
SHMT1-202ENST00000352886 SLC25A20O43772 301 aa15.39■□□□□ 0.05
SHMT1-202ENST00000352886 RNF183Q96D59 192 aa15.39■□□□□ 0.05
SHMT1-202ENST00000352886 CARD19Q96LW7 228 aa15.39■□□□□ 0.05
SHMT1-202ENST00000352886 FHL2Q14192 279 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 ATXN8Q156A1 80 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 PPDPFLQ8WWR9 84 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 F5H768 121 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 ANKRD29Q8N6D5 301 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 ICOSQ9Y6W8 199 aa15.38■□□□□ 0.05
SHMT1-202ENST00000352886 A0A0U1RRA0 63 aa15.37■□□□□ 0.05
SHMT1-202ENST00000352886 LINC00482Q8N8I6 264 aa15.37■□□□□ 0.05
SHMT1-202ENST00000352886 XGP55808 180 aa15.36■□□□□ 0.05
SHMT1-202ENST00000352886 H7C423 109 aa15.35■□□□□ 0.05
SHMT1-202ENST00000352886 GAGE6Q13070 117 aa15.35■□□□□ 0.05
SHMT1-202ENST00000352886 PRIMA1Q86XR5 153 aa15.35■□□□□ 0.05
SHMT1-202ENST00000352886 LINC00308Q8TCZ7 52 aa15.35■□□□□ 0.05
SHMT1-202ENST00000352886 LY6G6DO95868 133 aa15.34■□□□□ 0.05
SHMT1-202ENST00000352886 LINC01620Q4KN68 170 aa15.34■□□□□ 0.05
SHMT1-202ENST00000352886 CRLF1O75462 422 aa15.34■□□□□ 0.05
SHMT1-202ENST00000352886 DEFB130BP0DP73 79 aa15.34■□□□□ 0.05
SHMT1-202ENST00000352886 DEFB130AP0DP74 79 aa15.34■□□□□ 0.05
SHMT1-202ENST00000352886 TRBV6-8A0A0A6YYG3 113 aa15.33■□□□□ 0.04
SHMT1-202ENST00000352886 RPL13AP40429 203 aaKnown RBP15.33■□□□□ 0.04
SHMT1-202ENST00000352886 MEIG1Q5JSS6 88 aa15.32■□□□□ 0.04
SHMT1-202ENST00000352886 M0QXV9 152 aa15.32■□□□□ 0.04
SHMT1-202ENST00000352886 COX6CP09669 75 aa15.32■□□□□ 0.04
SHMT1-202ENST00000352886 IGKV3OR2-268A0A0C4DH90 116 aa15.31■□□□□ 0.04
SHMT1-202ENST00000352886 FN1P02751 2386 aaKnown RBP15.31■□□□□ 0.04
SHMT1-202ENST00000352886 IGLV4-60A0A075B6I1 120 aa15.31■□□□□ 0.04
SHMT1-202ENST00000352886 CHCHD5Q9BSY4 110 aa15.31■□□□□ 0.04
SHMT1-202ENST00000352886 KIR2DL5BQ8NHK3 375 aa15.29■□□□□ 0.04
SHMT1-202ENST00000352886 SOSTDC1Q6X4U4 206 aa15.29■□□□□ 0.04
SHMT1-202ENST00000352886 HERV-K104P63124 156 aa15.28■□□□□ 0.04
SHMT1-202ENST00000352886 CLEC2BQ92478 149 aa15.28■□□□□ 0.04
SHMT1-202ENST00000352886 SS18L2Q9UHA2 77 aa15.28■□□□□ 0.04
SHMT1-202ENST00000352886 SPATA3Q8NHX4 192 aa15.27■□□□□ 0.04
SHMT1-202ENST00000352886 TRBV10-2A0A0K0K1G8 114 aa15.27■□□□□ 0.03
SHMT1-202ENST00000352886 LINC00612Q8N6U2 182 aa15.26■□□□□ 0.03
SHMT1-202ENST00000352886 COPS9Q8WXC6 57 aa15.26■□□□□ 0.03
SHMT1-202ENST00000352886 X6R8D5 127 aa15.26■□□□□ 0.03
SHMT1-202ENST00000352886 GCN1Q92616 2671 aaKnown RBP15.26■□□□□ 0.03
SHMT1-202ENST00000352886 HECTD1Q9ULT8 2610 aa15.25■□□□□ 0.03
SHMT1-202ENST00000352886 NTN5Q8WTR8 489 aaPredicted RBP15.25■□□□□ 0.03
SHMT1-202ENST00000352886 ANAPC13Q9BS18 74 aa15.25■□□□□ 0.03
SHMT1-202ENST00000352886 COX7B2Q8TF08 81 aa15.24■□□□□ 0.03
SHMT1-202ENST00000352886 INAFM1C9JVW0 142 aa15.24■□□□□ 0.03
SHMT1-202ENST00000352886 VWFP04275 2813 aa15.24■□□□□ 0.03
SHMT1-202ENST00000352886 GYPEP15421 78 aa15.23■□□□□ 0.03
SHMT1-202ENST00000352886 LINC01600Q96MT4 127 aa15.23■□□□□ 0.03
SHMT1-202ENST00000352886 TOMM7Q9P0U1 55 aa15.23■□□□□ 0.03
SHMT1-202ENST00000352886 LST1O00453 97 aa15.22■□□□□ 0.03
SHMT1-202ENST00000352886 IGHV3OR16-9A0A0B4J2B5 98 aa15.22■□□□□ 0.03
SHMT1-202ENST00000352886 NOTCH2Q04721 2471 aa15.21■□□□□ 0.03
SHMT1-202ENST00000352886 C2orf82Q6UX34 121 aa15.21■□□□□ 0.03
SHMT1-202ENST00000352886 OTOGQ6ZRI0 2925 aa15.21■□□□□ 0.02
SHMT1-202ENST00000352886 C9orf66Q5T8R8 295 aa15.21■□□□□ 0.02
SHMT1-202ENST00000352886 NBEAL2Q6ZNJ1 2754 aa15.2■□□□□ 0.02
SHMT1-202ENST00000352886 SMIM9A6NGZ8 99 aa15.2■□□□□ 0.02
SHMT1-202ENST00000352886 TEX49A0A1B0GTD5 131 aa15.19■□□□□ 0.02
SHMT1-202ENST00000352886 FAM222AQ5U5X8 452 aa15.18■□□□□ 0.02
SHMT1-202ENST00000352886 PRO0255Q9UI72 69 aa15.18■□□□□ 0.02
SHMT1-202ENST00000352886 H3BT86 120 aa15.17■□□□□ 0.02
SHMT1-202ENST00000352886 C5orf38Q86SI9 138 aa15.17■□□□□ 0.02
SHMT1-202ENST00000352886 A0A087WZ39 114 aa15.17■□□□□ 0.02
SHMT1-202ENST00000352886 TMEM262E9PQX1 116 aa15.17■□□□□ 0.02
SHMT1-202ENST00000352886 LINC00959A0A1B0GUT2 108 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 MIR7-3HGQ8N6C7 128 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 UBE2WQ96B02 151 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 A0A096LPF7 62 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 B5MCH6 92 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 DEFB135Q30KP9 77 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 SHISA2Q6UWI4 295 aa15.16■□□□□ 0.02
SHMT1-202ENST00000352886 CITED1Q99966 193 aa15.15■□□□□ 0.02
SHMT1-202ENST00000352886 PPDPFQ9H3Y8 114 aa15.15■□□□□ 0.02
SHMT1-202ENST00000352886 NSD1Q96L73 2696 aaPredicted RBP15.15■□□□□ 0.02
SHMT1-202ENST00000352886 DEFB4AO15263 64 aa15.15■□□□□ 0.02
SHMT1-202ENST00000352886 NHLRC4P0CG21 123 aaPredicted RBP15.15■□□□□ 0.02
SHMT1-202ENST00000352886 COX7A2LO14548 114 aa15.14■□□□□ 0.01
SHMT1-202ENST00000352886 LYRM9A8MSI8 78 aa15.13■□□□□ 0.01
SHMT1-202ENST00000352886 PAX4O43316 350 aa15.12■□□□□ 0.01
SHMT1-202ENST00000352886 LINC00158P58513 81 aa15.12■□□□□ 0.01
SHMT1-202ENST00000352886 A0A1B0GUV1 79 aa15.12■□□□□ 0.01
SHMT1-202ENST00000352886 CFAP161Q6P656 301 aa15.12■□□□□ 0.01
SHMT1-202ENST00000352886 TENM1Q9UKZ4 2725 aa15.11■□□□□ 0.01
SHMT1-202ENST00000352886 XCL1P47992 114 aa15.11■□□□□ 0.01
SHMT1-202ENST00000352886 CLPSL2Q6UWE3 100 aa15.11■□□□□ 0.01
SHMT1-202ENST00000352886 SND1-IT1Q9HBX3 110 aa15.1■□□□□ 0.01
SHMT1-202ENST00000352886 APOC4P55056 127 aa15.09■□□□□ 0.01
SHMT1-202ENST00000352886 SS18Q15532 418 aa15.09■□□□□ 0.01
SHMT1-202ENST00000352886 TRAV13-2A0A0B4J235 113 aa15.08■□□□□ 0
SHMT1-202ENST00000352886 IGHV4-28A0A0C4DH34 117 aa15.08■□□□□ 0
SHMT1-202ENST00000352886 IBA57-AS1B1ANH7 110 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms