RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HERC1Q15751 4861 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 MPDZO75970 2070 aa1.44□□□□□ -2.18
HMGB1-201ENST00000326004 DYNC2H1Q8NCM8 4307 aaKnown RBP1.44□□□□□ -2.18
HMGB1-201ENST00000326004 NUP210LQ5VU65 1888 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 ABCA13Q86UQ4 5058 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 MYH10P35580 1976 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV2A0A0B4J234 112 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 A0A0J9YX75 114 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 LOC107986453A0A1B0GWG9 222 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 C2orf70A6NJV1 201 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 H3BT86 120 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 M0R2P5 195 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 OVOL1O14753 267 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 GNRH2O43555 120 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 PITX3O75364 302 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 NDUFC2O95298 119 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TRACP01848 142 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 CTSGP08311 255 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 ASAH2BP0C7U1 165 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 HMGA1P17096 107 aaKnown RBP1.43□□□□□ -2.18
HMGB1-201ENST00000326004 FKBP2P26885 142 aaKnown RBP1.43□□□□□ -2.18
HMGB1-201ENST00000326004 ASIPP42127 132 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 ATP5G3P48201 142 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 ZNF80P51504 273 aaPredicted RBP1.43□□□□□ -2.18
HMGB1-201ENST00000326004 SMIM11AP58511 58 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 RPL18Q07020 188 aaKnown RBP1.43□□□□□ -2.18
HMGB1-201ENST00000326004 DEFB121Q5J5C9 76 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM14EPQ6UXP3 125 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 C15orf53Q8NAA6 179 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 BRK1Q8WUW1 75 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 DSCR8Q96T75 97 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM70Q9BUB7 260 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TTTY10Q9BZA0 68 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM191AQ9H0A3 160 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 SLC39A9Q9NUM3 307 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 PCTPQ9UKL6 214 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 HHLA3Q9XRX5 114 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 FAM215AQ9Y5M1 114 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 NUMA1Q14980 2115 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 SACSQ9NZJ4 4579 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 USF3Q68DE3 2245 aa1.43□□□□□ -2.18
HMGB1-201ENST00000326004 DNAH1Q9P2D7 4330 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 COL7A1Q02388 2944 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 DOCK4Q8N1I0 1966 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TMSB15BA0A087X1C1 80 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TRGV5A0A0B4J1U4 118 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV13-1A0A0B4J241 112 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV41A0A0B4J266 112 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 C3orf85A0A1B0GTC6 90 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 hADV29S1A0JD25 119 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 LY6LH3BQJ8 138 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 BUB1B-PAK6H3BSN5 160 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 UQCRQO14949 82 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 ZNF73O43830 326 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 SPINK4O60575 86 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 LYZL6O75951 148 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 LGALS1P09382 135 aaKnown RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 MGST1P10620 155 aaKnown RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 RPL28P46779 137 aaKnown RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 DSCR4P56555 118 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TMEM258P61165 79 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 HIST1H4AP62805 103 aaKnown RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 PLGLB1Q02325 96 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TFF3Q07654 80 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 CDK5R1Q15078 307 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 KISS1Q15726 138 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 RRN3P1Q2M238 152 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 CFAP126Q5VTH2 177 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TRAPPC6BQ86SZ2 158 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 TEN1Q86WV5 123 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 CLECL1Q8IZS7 167 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 LINC00311Q8N616 119 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 PLEKHB2Q96CS7 222 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 BORCS8Q96FH0 119 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 ODF3Q96PU9 254 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 AGPAT4-IT1Q9H0P7 198 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 OTORQ9NRC9 128 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 NHP2Q9NX24 153 aaKnown RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 CHCHD2Q9Y6H1 151 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-201ENST00000326004 CACNA1CQ13936 2221 aa1.42□□□□□ -2.18
HMGB1-201ENST00000326004 MYO18AQ92614 2054 aaKnown RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 STAB2Q8WWQ8 2551 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 TRBV19A0A075B6N1 114 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV27A0A087WT01 109 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 SPTY2D1-AS1A0A0U1RR47 76 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 SDHAF1A6NFY7 115 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 CPSF4LA6NMK7 179 aaKnown RBP1.41□□□□□ -2.18
HMGB1-201ENST00000326004 A8MWV9 139 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 ODF3BA8MYP8 253 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 H3BVH4 76 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 K7EMI3 77 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 CCL22O00626 93 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 TCL1BO95988 128 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 CRYGAP11844 174 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 DEFA4P12838 97 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 HLA-DRB4P13762 266 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 COX7CP15954 63 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 DYNLT3P51808 116 aa1.41□□□□□ -2.18
HMGB1-201ENST00000326004 FXYD2P54710 66 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms