RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 UBE2L6O14933 153 aa14.18□□□□□ -0.14
VPS53-201ENST00000291074 ZNF625Q96I27 306 aaPredicted RBP14.18□□□□□ -0.14
VPS53-201ENST00000291074 NDUFA1O15239 70 aa14.18□□□□□ -0.14
VPS53-201ENST00000291074 IGLV5-39A0A0G2JS06 123 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 SMIM1B2RUZ4 78 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 INAFM1C9JVW0 142 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 J3QR89 54 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 CRLF1O75462 422 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 FHL2Q14192 279 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 Q9H8V8 135 aa14.17□□□□□ -0.14
VPS53-201ENST00000291074 TRBV20-1A0A075B6N2 111 aa14.16□□□□□ -0.14
VPS53-201ENST00000291074 DEFB130BP0DP73 79 aa14.16□□□□□ -0.14
VPS53-201ENST00000291074 DEFB130AP0DP74 79 aa14.16□□□□□ -0.14
VPS53-201ENST00000291074 A0A0U1RRA0 63 aa14.15□□□□□ -0.14
VPS53-201ENST00000291074 GAGE6Q13070 117 aa14.15□□□□□ -0.14
VPS53-201ENST00000291074 FAM19A3Q7Z5A8 133 aa14.15□□□□□ -0.14
VPS53-201ENST00000291074 IGKV3OR2-268A0A0C4DH90 116 aa14.13□□□□□ -0.15
VPS53-201ENST00000291074 F5H768 121 aa14.13□□□□□ -0.15
VPS53-201ENST00000291074 TRIAP1O43715 76 aa14.11□□□□□ -0.15
VPS53-201ENST00000291074 TIMM17BO60830 172 aa14.11□□□□□ -0.15
VPS53-201ENST00000291074 FOXI1Q12951 378 aa14.1□□□□□ -0.15
VPS53-201ENST00000291074 IGLV4-60A0A075B6I1 120 aa14.1□□□□□ -0.15
VPS53-201ENST00000291074 MT-ATP8P03928 68 aa14.1□□□□□ -0.15
VPS53-201ENST00000291074 HIVEP1P15822 2718 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 TRBV6-8A0A0A6YYG3 113 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 C9JAW5 83 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 CDIP1Q9H305 208 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 X6R8D5 127 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 ATRQ13535 2644 aa14.09□□□□□ -0.15
VPS53-201ENST00000291074 PRIMA1Q86XR5 153 aa14.08□□□□□ -0.15
VPS53-201ENST00000291074 CHCHD5Q9BSY4 110 aa14.08□□□□□ -0.15
VPS53-201ENST00000291074 ATP6V0E2Q8NHE4 81 aa14.08□□□□□ -0.16
VPS53-201ENST00000291074 CARD19Q96LW7 228 aa14.08□□□□□ -0.16
VPS53-201ENST00000291074 CIRBPQ14011 172 aaKnown RBP14.07□□□□□ -0.16
VPS53-201ENST00000291074 ICOSQ9Y6W8 199 aa14.07□□□□□ -0.16
VPS53-201ENST00000291074 TRBV30A0A0K0K1B3 111 aa14.07□□□□□ -0.16
VPS53-201ENST00000291074 TEN1Q86WV5 123 aa14.07□□□□□ -0.16
VPS53-201ENST00000291074 LINC00308Q8TCZ7 52 aa14.07□□□□□ -0.16
VPS53-201ENST00000291074 IFITM1P13164 125 aa14.06□□□□□ -0.16
VPS53-201ENST00000291074 ANKRD29Q8N6D5 301 aa14.06□□□□□ -0.16
VPS53-201ENST00000291074 KIR2DL5BQ8NHK3 375 aa14.06□□□□□ -0.16
VPS53-201ENST00000291074 SLC25A20O43772 301 aa14.06□□□□□ -0.16
VPS53-201ENST00000291074 H7C423 109 aa14.05□□□□□ -0.16
VPS53-201ENST00000291074 RPL13AP40429 203 aaKnown RBP14.05□□□□□ -0.16
VPS53-201ENST00000291074 MEIG1Q5JSS6 88 aa14.05□□□□□ -0.16
VPS53-201ENST00000291074 SOSTDC1Q6X4U4 206 aa14.05□□□□□ -0.16
VPS53-201ENST00000291074 XGP55808 180 aa14.05□□□□□ -0.16
VPS53-201ENST00000291074 LINC00612Q8N6U2 182 aa14.05□□□□□ -0.16
VPS53-201ENST00000291074 GYPEP15421 78 aa14.04□□□□□ -0.16
VPS53-201ENST00000291074 DEFB4AO15263 64 aa14.04□□□□□ -0.16
VPS53-201ENST00000291074 RNF183Q96D59 192 aa14.04□□□□□ -0.16
VPS53-201ENST00000291074 ATXN8Q156A1 80 aa14.03□□□□□ -0.16
VPS53-201ENST00000291074 C9orf66Q5T8R8 295 aa14.03□□□□□ -0.16
VPS53-201ENST00000291074 TEP1Q99973 2627 aaKnown RBP14.03□□□□□ -0.16
VPS53-201ENST00000291074 A0A096LPF7 62 aa14.02□□□□□ -0.16
VPS53-201ENST00000291074 DEFB135Q30KP9 77 aa14.02□□□□□ -0.16
VPS53-201ENST00000291074 LINC01620Q4KN68 170 aa14.02□□□□□ -0.16
VPS53-201ENST00000291074 PPDPFLQ8WWR9 84 aa14.02□□□□□ -0.17
VPS53-201ENST00000291074 SS18L2Q9UHA2 77 aa14.02□□□□□ -0.17
VPS53-201ENST00000291074 FAM222AQ5U5X8 452 aa14.01□□□□□ -0.17
VPS53-201ENST00000291074 CLEC2BQ92478 149 aa14.01□□□□□ -0.17
VPS53-201ENST00000291074 TOMM7Q9P0U1 55 aa14.01□□□□□ -0.17
VPS53-201ENST00000291074 TRRAPQ9Y4A5 3859 aa14□□□□□ -0.17
VPS53-201ENST00000291074 COX7B2Q8TF08 81 aa13.98□□□□□ -0.17
VPS53-201ENST00000291074 IGHV3OR16-9A0A0B4J2B5 98 aa13.98□□□□□ -0.17
VPS53-201ENST00000291074 HERV-K104P63124 156 aa13.97□□□□□ -0.17
VPS53-201ENST00000291074 C5orf38Q86SI9 138 aa13.97□□□□□ -0.17
VPS53-201ENST00000291074 SMIM9A6NGZ8 99 aa13.97□□□□□ -0.17
VPS53-201ENST00000291074 TMEM262E9PQX1 116 aa13.96□□□□□ -0.17
VPS53-201ENST00000291074 COX6CP09669 75 aa13.96□□□□□ -0.17
VPS53-201ENST00000291074 PRO0255Q9UI72 69 aa13.96□□□□□ -0.17
VPS53-201ENST00000291074 CLPSL2Q6UWE3 100 aa13.96□□□□□ -0.18
VPS53-201ENST00000291074 NTN5Q8WTR8 489 aaPredicted RBP13.95□□□□□ -0.18
VPS53-201ENST00000291074 LINC00959A0A1B0GUT2 108 aa13.94□□□□□ -0.18
VPS53-201ENST00000291074 IGHV4-28A0A0C4DH34 117 aa13.93□□□□□ -0.18
VPS53-201ENST00000291074 TRBV10-2A0A0K0K1G8 114 aa13.93□□□□□ -0.18
VPS53-201ENST00000291074 CITED1Q99966 193 aa13.93□□□□□ -0.18
VPS53-201ENST00000291074 PAX4O43316 350 aa13.93□□□□□ -0.18
VPS53-201ENST00000291074 M0QXV9 152 aa13.92□□□□□ -0.18
VPS53-201ENST00000291074 A0A087WZ39 114 aa13.92□□□□□ -0.18
VPS53-201ENST00000291074 LST1O00453 97 aa13.92□□□□□ -0.18
VPS53-201ENST00000291074 MIR7-3HGQ8N6C7 128 aa13.92□□□□□ -0.18
VPS53-201ENST00000291074 LYRM9A8MSI8 78 aa13.91□□□□□ -0.18
VPS53-201ENST00000291074 XCL1P47992 114 aa13.91□□□□□ -0.18
VPS53-201ENST00000291074 C11orf68Q9H3H3 251 aaKnown RBP13.91□□□□□ -0.18
VPS53-201ENST00000291074 ANAPC13Q9BS18 74 aa13.91□□□□□ -0.18
VPS53-201ENST00000291074 CELA1Q9UNI1 258 aa13.91□□□□□ -0.18
VPS53-201ENST00000291074 COPS9Q8WXC6 57 aa13.9□□□□□ -0.18
VPS53-201ENST00000291074 B5MCH6 92 aa13.9□□□□□ -0.18
VPS53-201ENST00000291074 APOC4P55056 127 aa13.9□□□□□ -0.18
VPS53-201ENST00000291074 TEX49A0A1B0GTD5 131 aa13.89□□□□□ -0.19
VPS53-201ENST00000291074 C2orf82Q6UX34 121 aa13.89□□□□□ -0.19
VPS53-201ENST00000291074 Q8N3U1 123 aa13.89□□□□□ -0.19
VPS53-201ENST00000291074 LINC00158P58513 81 aa13.88□□□□□ -0.19
VPS53-201ENST00000291074 DAD1P61803 113 aa13.87□□□□□ -0.19
VPS53-201ENST00000291074 A0A1B0GUV1 79 aa13.87□□□□□ -0.19
VPS53-201ENST00000291074 SHISA2Q6UWI4 295 aa13.87□□□□□ -0.19
VPS53-201ENST00000291074 PFN2P35080 140 aa13.86□□□□□ -0.19
VPS53-201ENST00000291074 Q8NAQ8 132 aa13.86□□□□□ -0.19
VPS53-201ENST00000291074 LINC01600Q96MT4 127 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms