RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ESM1Q9NQ30 184 aa4.55□□□□□ -1.68
VPS13D-201ENST00000011700 COX8CQ7Z4L0 72 aa4.55□□□□□ -1.68
VPS13D-201ENST00000011700 MBD6Q96DN6 1003 aa4.55□□□□□ -1.68
VPS13D-201ENST00000011700 RETNQ9HD89 108 aa4.55□□□□□ -1.68
VPS13D-201ENST00000011700 ZNF22P17026 224 aaPredicted RBP4.55□□□□□ -1.68
VPS13D-201ENST00000011700 EGFEM1PQ0D2K5 195 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 PATE2Q6UY27 113 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 DEFB135Q30KP9 77 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 PSMG3-AS1Q96PY0 264 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 ZNF80P51504 273 aaPredicted RBP4.54□□□□□ -1.68
VPS13D-201ENST00000011700 ADORA2A-AS1P86434 159 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 CELA1Q9UNI1 258 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 WFDC10AQ9H1F0 79 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 NCR3O14931 201 aa4.54□□□□□ -1.68
VPS13D-201ENST00000011700 A6NDX4 124 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 ZNF581Q9P0T4 197 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 PRO0628Q9UI54 55 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 LINC00467Q9BRT7 94 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 PPDPFQ9H3Y8 114 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 LY6HO94772 140 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 MPLKIPQ8TAP9 179 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 FLNAP21333 2647 aaKnown RBP4.53□□□□□ -1.68
VPS13D-201ENST00000011700 MT-ATP8P03928 68 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 NTM-AS1Q6ZSK4 140 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 APRG1Q8IVJ8 170 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 Q6YL49 198 aa4.53□□□□□ -1.68
VPS13D-201ENST00000011700 FLNBO75369 2602 aaKnown RBP4.53□□□□□ -1.68
VPS13D-201ENST00000011700 DEFB114Q30KQ6 69 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 WFDC10BQ8IUB3 73 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 CDKN2A-AS1Q9UH64 79 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 Q8N2B8 174 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 SELENOKQ9Y6D0 94 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 C2orf48Q96LS8 159 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 E7EUB6 86 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 CENPFP49454 3210 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 DEFB131BA0A096LNP1 70 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 IGKV1D-37A0A075B6S9 117 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 IGHV4-61A0A0C4DH41 118 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 DNAJC9-AS1A6NH13 148 aa4.52□□□□□ -1.69
VPS13D-201ENST00000011700 EIF4EBP3O60516 100 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-201ENST00000011700 C1orf158Q8N1D5 194 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 Q8N814 137 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 ZNF503-AS2A6NEH8 195 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 HCG22E2RYF7 251 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 C6orf99Q4VX62 202 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 A0A096LPF7 62 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 LY6LH3BQJ8 138 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 DEFB136Q30KP8 78 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 ZFAND3Q9H8U3 227 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 FAM19A1Q7Z5A9 133 aa4.51□□□□□ -1.69
VPS13D-201ENST00000011700 POLR2KP53803 58 aaKnown RBP4.5□□□□□ -1.69
VPS13D-201ENST00000011700 IGHV4-38-2P0DP08 117 aa4.5□□□□□ -1.69
VPS13D-201ENST00000011700 DMBT1Q9UGM3 2413 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-201ENST00000011700 MSRB1Q9NZV6 116 aa4.5□□□□□ -1.69
VPS13D-201ENST00000011700 Q6ZVQ6 151 aa4.5□□□□□ -1.69
VPS13D-201ENST00000011700 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-201ENST00000011700 RBX1P62877 108 aa4.5□□□□□ -1.69
VPS13D-201ENST00000011700 TRBV7-7A0A0K0K1E9 115 aa4.5□□□□□ -1.69
VPS13D-201ENST00000011700 IGHV4-30-2A0A087WSY4 118 aa4.49□□□□□ -1.69
VPS13D-201ENST00000011700 REG3GQ6UW15 175 aa4.49□□□□□ -1.69
VPS13D-201ENST00000011700 C2orf91Q6ZV80 131 aa4.49□□□□□ -1.69
VPS13D-201ENST00000011700 HELZ2Q9BYK8 2649 aaKnown RBP4.48□□□□□ -1.69
VPS13D-201ENST00000011700 IGLV2-8P01709 118 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 Q6ZQY7 126 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 DEFB104AQ8WTQ1 72 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 Q8N7P7 452 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 NOTCH1P46531 2555 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 ERC2-IT1O76042 136 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 TSHBP01222 138 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 C1orf137Q5JT78 98 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 CRYGAP11844 174 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 SMIM11BQ8TCY0 68 aa4.48□□□□□ -1.69
VPS13D-201ENST00000011700 ESRGQ1W209 222 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 UNQ9165/PRO28630Q6UXU0 137 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 IGLV2-11P01706 119 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 CDC42SE2Q9NRR3 84 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 C3orf84H3BNL1 204 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 NUPR1O60356 82 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 ACYP2P14621 99 aa4.47□□□□□ -1.69
VPS13D-201ENST00000011700 CRIP2P52943 208 aaPredicted RBP4.47□□□□□ -1.69
VPS13D-201ENST00000011700 GCN1Q92616 2671 aaKnown RBP4.47□□□□□ -1.69
VPS13D-201ENST00000011700 Q6ZTI0 123 aa4.46□□□□□ -1.69
VPS13D-201ENST00000011700 DCANP1Q8TF63 244 aa4.46□□□□□ -1.69
VPS13D-201ENST00000011700 LINC01546A6NGU7 62 aa4.46□□□□□ -1.69
VPS13D-201ENST00000011700 IGIPA6NJ69 53 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 RITA1Q96K30 269 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 PRAC2D3DTV9 90 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 KPRPQ5T749 579 aaPredicted RBP4.46□□□□□ -1.7
VPS13D-201ENST00000011700 IGLV1-40P01703 118 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 LMO4P61968 165 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 NRGNQ92686 78 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 ITPR3Q14573 2671 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 MRPS12O15235 138 aaKnown RBP4.46□□□□□ -1.7
VPS13D-201ENST00000011700 AMELXQ99217 191 aa4.46□□□□□ -1.7
VPS13D-201ENST00000011700 UNC79Q9P2D8 2635 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 Q8N3U1 123 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 TMEM254Q8TBM7 123 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 LINC00208Q96KT6 92 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 CCDC179H3BU77 68 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 ZFP36P26651 326 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms