RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TRBV7-3A0A075B6L6 115 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 GAGE12JA6NER3 117 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 F5H697 171 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 MGPP08493 103 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 POLR2KP53803 58 aaKnown RBP5.97□□□□□ -1.45
TRIM28-214ENST00000600840 TIRAPP58753 221 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 GAGE1Q13065 139 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 GAGE4Q13068 117 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 GAGE5Q13069 117 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 GAGE13Q4V321 117 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 RPL39LQ96EH5 51 aaKnown RBP5.97□□□□□ -1.45
TRIM28-214ENST00000600840 DNAJC30Q96LL9 226 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 ICOSQ9Y6W8 199 aa5.97□□□□□ -1.45
TRIM28-214ENST00000600840 SMKR1H3BMG3 65 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 EREGO14944 169 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 ATP5LO75964 103 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 FCER1GP30273 86 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 SLC25A34Q6PIV7 304 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 NTM-AS1Q6ZSK4 140 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 NEGR1Q7Z3B1 354 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 C6orf223Q8N319 242 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 Q8N8P6 123 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 Q9H8V8 135 aa5.96□□□□□ -1.46
TRIM28-214ENST00000600840 A0A1B0GV90 55 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 H7C1H1 209 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 TNFRSF6BO95407 300 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 NCR2O95944 276 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 INAFM2P0DMQ5 153 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 IFI27P40305 119 aaPredicted RBP5.95□□□□□ -1.46
TRIM28-214ENST00000600840 CCL18P55774 89 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 RPL36AP83881 106 aaKnown RBP5.95□□□□□ -1.46
TRIM28-214ENST00000600840 SH2D6Q7Z4S9 175 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 ATP6V0E2Q8NHE4 81 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 RPL36ALQ969Q0 106 aaKnown RBP5.95□□□□□ -1.46
TRIM28-214ENST00000600840 IFI27L1Q96BM0 104 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 C20orf78Q9BR46 151 aa5.95□□□□□ -1.46
TRIM28-214ENST00000600840 APOBP04114 4563 aaKnown RBP5.95□□□□□ -1.46
TRIM28-214ENST00000600840 TCAPO15273 167 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 SIVA1O15304 175 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 DLEU1O43261 78 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 NPYP01303 97 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 RPL32P62910 135 aaKnown RBP5.94□□□□□ -1.46
TRIM28-214ENST00000600840 ORMDL2Q53FV1 153 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 UPK3BQ9BT76 320 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 GTSF1LQ9H1H1 148 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 DNAH5Q8TE73 4624 aa5.94□□□□□ -1.46
TRIM28-214ENST00000600840 DMBT1Q9UGM3 2413 aaPredicted RBP5.93□□□□□ -1.46
TRIM28-214ENST00000600840 TRBV27A0A0K0K1C4 114 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 SDHAF1A6NFY7 115 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 EPM2AB3EWF7 344 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 COX8AP10176 69 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 KRTAP10-2P60368 255 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 LAGE3Q14657 143 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 DAZ4Q86SG3 579 aaKnown RBP5.93□□□□□ -1.46
TRIM28-214ENST00000600840 DAZ3Q9NR90 486 aaKnown RBP5.93□□□□□ -1.46
TRIM28-214ENST00000600840 TNFRSF18Q9Y5U5 241 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 UBR4Q5T4S7 5183 aa5.93□□□□□ -1.46
TRIM28-214ENST00000600840 A0A096LNJ9 63 aa5.92□□□□□ -1.46
TRIM28-214ENST00000600840 IGHV3-38A0A0C4DH36 116 aa5.92□□□□□ -1.46
TRIM28-214ENST00000600840 LOC389332A0A1B0GUA5 103 aa5.92□□□□□ -1.46
TRIM28-214ENST00000600840 TSHBP01222 138 aa5.92□□□□□ -1.46
TRIM28-214ENST00000600840 FUSP35637 526 aaKnown RBP eCLIP5.92□□□□□ -1.46
TRIM28-214ENST00000600840 SUMO2P61956 95 aaKnown RBP5.92□□□□□ -1.46
TRIM28-214ENST00000600840 LELP1Q5T871 98 aa5.92□□□□□ -1.46
TRIM28-214ENST00000600840 TRBV6-8A0A0A6YYG3 113 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 TRAV12-1A0A0B4J245 112 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 VCYO14598 125 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 SEC11AP67812 179 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 ATOH7Q8N100 152 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 ORAOV1Q8WV07 137 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 CHCHD7Q9BUK0 85 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 SMIM2Q9BVW6 85 aa5.91□□□□□ -1.46
TRIM28-214ENST00000600840 I3L3M4 83 aa5.9□□□□□ -1.46
TRIM28-214ENST00000600840 PLNP26678 52 aa5.9□□□□□ -1.46
TRIM28-214ENST00000600840 Q6ZRN7 208 aaPredicted RBP5.9□□□□□ -1.46
TRIM28-214ENST00000600840 WFDC10BQ8IUB3 73 aa5.9□□□□□ -1.46
TRIM28-214ENST00000600840 DEFB104AQ8WTQ1 72 aa5.9□□□□□ -1.46
TRIM28-214ENST00000600840 hDV102S1A0JD36 115 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.89□□□□□ -1.47
TRIM28-214ENST00000600840 DPM2O94777 84 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 DNAH10OSP0CZ25 163 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 BATFQ16520 125 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 TMEM97Q5BJF2 176 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 PAPPA-AS1Q5QFB9 102 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 LINC00173Q6ZV60 143 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 BOD1L2Q8IYS8 172 aa5.89□□□□□ -1.47
TRIM28-214ENST00000600840 A6NDN8 102 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 IGKCP01834 107 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 PRSS1P07477 247 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 ZNF25P17030 456 aaPredicted RBP5.88□□□□□ -1.47
TRIM28-214ENST00000600840 Q8N3U1 123 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 FAM104AQ969W3 186 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 HIGD1BQ9P298 99 aa5.88□□□□□ -1.47
TRIM28-214ENST00000600840 H0Y8G0 127 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 HSD52Q0P140 79 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 COTL1Q14019 142 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 ODF1Q14990 250 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 MAJINQ3KP22 176 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 TTC32Q5I0X7 151 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 LINC01556Q5JQF7 62 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms