RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ST20Q9HBF5 79 aa14.94□□□□□ -0.02
LSM4-202ENST00000593564 GAS8-AS1O95177 125 aa14.93□□□□□ -0.02
LSM4-202ENST00000593564 MRPL52Q86TS9 123 aaKnown RBP14.93□□□□□ -0.02
LSM4-202ENST00000593564 BORCS7Q96B45 105 aa14.93□□□□□ -0.02
LSM4-202ENST00000593564 LINC00526Q96FQ7 95 aa14.93□□□□□ -0.02
LSM4-202ENST00000593564 CARD19Q96LW7 228 aa14.93□□□□□ -0.02
LSM4-202ENST00000593564 TMEM242Q9NWH2 141 aa14.93□□□□□ -0.02
LSM4-202ENST00000593564 CDC42SE2Q9NRR3 84 aa14.92□□□□□ -0.02
LSM4-202ENST00000593564 SS18Q15532 418 aa14.91□□□□□ -0.02
LSM4-202ENST00000593564 CD164L2Q6UWJ8 174 aa14.91□□□□□ -0.02
LSM4-202ENST00000593564 POLR2KP53803 58 aaKnown RBP14.9□□□□□ -0.02
LSM4-202ENST00000593564 TMEM191AQ9H0A3 160 aa14.9□□□□□ -0.02
LSM4-202ENST00000593564 TRBV27A0A0K0K1C4 114 aa14.89□□□□□ -0.03
LSM4-202ENST00000593564 BLOC1S1P78537 153 aa14.89□□□□□ -0.03
LSM4-202ENST00000593564 SPINK6Q6UWN8 80 aa14.89□□□□□ -0.03
LSM4-202ENST00000593564 A0A0J9YXV3 536 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 A0A1B0GUT8 65 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 C7orf77A4D0Y5 90 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 ZNF561-AS1K7EIQ3 104 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 SYCNQ0VAF6 134 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 ZNF664Q8N3J9 261 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 TSKUQ8WUA8 353 aa14.88□□□□□ -0.03
LSM4-202ENST00000593564 HIGD1CA8MV81 97 aa14.87□□□□□ -0.03
LSM4-202ENST00000593564 CEBPGP53567 150 aa14.87□□□□□ -0.03
LSM4-202ENST00000593564 RAB4AP20338 218 aa14.86□□□□□ -0.03
LSM4-202ENST00000593564 REG3GQ6UW15 175 aa14.86□□□□□ -0.03
LSM4-202ENST00000593564 ALKAL2Q6UX46 152 aa14.86□□□□□ -0.03
LSM4-202ENST00000593564 Q6ZRP5 223 aa14.86□□□□□ -0.03
LSM4-202ENST00000593564 CAMPP49913 170 aa14.85□□□□□ -0.03
LSM4-202ENST00000593564 LINC01551Q86U37 167 aa14.85□□□□□ -0.03
LSM4-202ENST00000593564 PTTG1IPP53801 180 aa14.84□□□□□ -0.03
LSM4-202ENST00000593564 KRTAP10-8P60410 259 aa14.84□□□□□ -0.03
LSM4-202ENST00000593564 SRSF9Q13242 221 aaKnown RBP eCLIP14.84□□□□□ -0.03
LSM4-202ENST00000593564 AMN1Q8IY45 258 aa14.84□□□□□ -0.03
LSM4-202ENST00000593564 ISOC2Q96AB3 205 aa14.84□□□□□ -0.03
LSM4-202ENST00000593564 SMIM7Q9BQ49 75 aa14.84□□□□□ -0.03
LSM4-202ENST00000593564 ODF1Q14990 250 aa14.83□□□□□ -0.04
LSM4-202ENST00000593564 C1orf196B1AJZ1 125 aa14.82□□□□□ -0.04
LSM4-202ENST00000593564 VCYO14598 125 aa14.82□□□□□ -0.04
LSM4-202ENST00000593564 OSTCQ9NRP0 149 aa14.82□□□□□ -0.04
LSM4-202ENST00000593564 CSDC2Q9Y534 153 aaKnown RBP14.82□□□□□ -0.04
LSM4-202ENST00000593564 IGLV4-69A0A075B6H9 119 aa14.81□□□□□ -0.04
LSM4-202ENST00000593564 LOC107984640A0A0U1RRK4 108 aa14.81□□□□□ -0.04
LSM4-202ENST00000593564 COX7A2LO14548 114 aa14.8□□□□□ -0.04
LSM4-202ENST00000593564 MALP21145 153 aa14.8□□□□□ -0.04
LSM4-202ENST00000593564 FCER1GP30273 86 aa14.8□□□□□ -0.04
LSM4-202ENST00000593564 SMAGPQ0VAQ4 97 aa14.8□□□□□ -0.04
LSM4-202ENST00000593564 GAGE2BQ13066 116 aa14.8□□□□□ -0.04
LSM4-202ENST00000593564 SMKR1H3BMG3 65 aa14.79□□□□□ -0.04
LSM4-202ENST00000593564 PPP1R17O96001 155 aa14.79□□□□□ -0.04
LSM4-202ENST00000593564 EIF5A2Q9GZV4 153 aaKnown RBP14.79□□□□□ -0.04
LSM4-202ENST00000593564 UBE2D4Q9Y2X8 147 aa14.79□□□□□ -0.04
LSM4-202ENST00000593564 ZNF727A8MUV8 499 aa14.78□□□□□ -0.04
LSM4-202ENST00000593564 RIGQ13278 110 aa14.78□□□□□ -0.04
LSM4-202ENST00000593564 NRACQ8N912 160 aa14.78□□□□□ -0.04
LSM4-202ENST00000593564 NUP35Q8NFH5 326 aa14.78□□□□□ -0.04
LSM4-202ENST00000593564 SUMO2P61956 95 aaKnown RBP14.77□□□□□ -0.05
LSM4-202ENST00000593564 CAMK2N2Q96S95 79 aa14.77□□□□□ -0.05
LSM4-202ENST00000593564 A0A1W2PNN7 141 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 APOMO95445 188 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 AKAP14Q86UN6 197 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 C2orf48Q96LS8 159 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 KIR2DL4Q99706 377 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 V9GYV3 84 aa14.76□□□□□ -0.05
LSM4-202ENST00000593564 TRAV13-1A0A0B4J241 112 aa14.75□□□□□ -0.05
LSM4-202ENST00000593564 RNASE13Q5GAN3 156 aaKnown RBP14.75□□□□□ -0.05
LSM4-202ENST00000593564 PPP1R2P9O14990 202 aa14.74□□□□□ -0.05
LSM4-202ENST00000593564 SRP19P09132 144 aaKnown RBP14.74□□□□□ -0.05
LSM4-202ENST00000593564 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.73□□□□□ -0.05
LSM4-202ENST00000593564 Q6ZUT4 128 aa14.73□□□□□ -0.05
LSM4-202ENST00000593564 TIMM21Q9BVV7 248 aa14.73□□□□□ -0.05
LSM4-202ENST00000593564 C9orf116Q5BN46 136 aaPredicted RBP14.72□□□□□ -0.05
LSM4-202ENST00000593564 NAT8BQ9UHF3 227 aa14.72□□□□□ -0.05
LSM4-202ENST00000593564 C5orf38Q86SI9 138 aa14.71□□□□□ -0.05
LSM4-202ENST00000593564 TMEM18Q96B42 140 aa14.71□□□□□ -0.05
LSM4-202ENST00000593564 MRPL51Q4U2R6 128 aaKnown RBP14.7□□□□□ -0.06
LSM4-202ENST00000593564 FAM104BQ5XKR9 115 aa14.7□□□□□ -0.06
LSM4-202ENST00000593564 PSORS1C2Q9UIG4 136 aa14.7□□□□□ -0.06
LSM4-202ENST00000593564 RPL18AQ02543 176 aaKnown RBP14.69□□□□□ -0.06
LSM4-202ENST00000593564 SPAG11BQ08648 103 aa14.69□□□□□ -0.06
LSM4-202ENST00000593564 RNF151Q2KHN1 245 aa14.69□□□□□ -0.06
LSM4-202ENST00000593564 C20orf78Q9BR46 151 aa14.69□□□□□ -0.06
LSM4-202ENST00000593564 LINC00862A6NCI5 91 aa14.67□□□□□ -0.06
LSM4-202ENST00000593564 MT-ND6P03923 174 aa14.67□□□□□ -0.06
LSM4-202ENST00000593564 RPL32P62910 135 aaKnown RBP14.67□□□□□ -0.06
LSM4-202ENST00000593564 TMEM241Q24JQ0 296 aa14.67□□□□□ -0.06
LSM4-202ENST00000593564 OR10D4PQ8NGN7 298 aa14.67□□□□□ -0.06
LSM4-202ENST00000593564 TRBV24-1A0A075B6N3 115 aa14.66□□□□□ -0.06
LSM4-202ENST00000593564 TCAPO15273 167 aa14.66□□□□□ -0.06
LSM4-202ENST00000593564 FAM74A3Q4VXF1 159 aa14.66□□□□□ -0.06
LSM4-202ENST00000593564 OPRPNQ99935 248 aaPredicted RBP14.66□□□□□ -0.06
LSM4-202ENST00000593564 RPL23P62829 140 aaKnown RBP14.65□□□□□ -0.06
LSM4-202ENST00000593564 SMIM27A0A1W2PRY6 76 aa14.64□□□□□ -0.07
LSM4-202ENST00000593564 RPL39P62891 51 aaKnown RBP14.64□□□□□ -0.07
LSM4-202ENST00000593564 PHF5AQ7RTV0 110 aaKnown RBP14.64□□□□□ -0.07
LSM4-202ENST00000593564 FAM104AQ969W3 186 aa14.64□□□□□ -0.07
LSM4-202ENST00000593564 MRPL35Q9NZE8 188 aaKnown RBP14.64□□□□□ -0.07
LSM4-202ENST00000593564 A0A1B0GW15 77 aa14.63□□□□□ -0.07
LSM4-202ENST00000593564 F8WDY8 70 aa14.63□□□□□ -0.07
LSM4-202ENST00000593564 CKS2P33552 79 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms