RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 PTTG1IPP53801 180 aa16.1■□□□□ 0.17
CCDC47-204ENST00000582252 GTSF1LQ9H1H1 148 aa16.1■□□□□ 0.17
CCDC47-204ENST00000582252 LEPROTO15243 131 aa16.09■□□□□ 0.17
CCDC47-204ENST00000582252 CEMP1Q6PRD7 247 aaPredicted RBP16.09■□□□□ 0.17
CCDC47-204ENST00000582252 Q6ZVH6 145 aa16.09■□□□□ 0.17
CCDC47-204ENST00000582252 LINC00612Q8N6U2 182 aa16.08■□□□□ 0.17
CCDC47-204ENST00000582252 FAM104AQ969W3 186 aa16.08■□□□□ 0.17
CCDC47-204ENST00000582252 X6R8D5 127 aa16.08■□□□□ 0.17
CCDC47-204ENST00000582252 TINCRA0A1B0GVN0 87 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 J3QQQ9 107 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 SMIM13P0DJ93 91 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 EGFEM1PQ0D2K5 195 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 VAMP3Q15836 100 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 Q6ZUT4 128 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 PLEKHB2Q96CS7 222 aa16.08■□□□□ 0.16
CCDC47-204ENST00000582252 MGAM2Q2M2H8 2515 aa16.07■□□□□ 0.16
CCDC47-204ENST00000582252 CSDC2Q9Y534 153 aaKnown RBP16.07■□□□□ 0.16
CCDC47-204ENST00000582252 NOTCH1P46531 2555 aa16.06■□□□□ 0.16
CCDC47-204ENST00000582252 FXYD2P54710 66 aa16.06■□□□□ 0.16
CCDC47-204ENST00000582252 FHL2Q14192 279 aa16.06■□□□□ 0.16
CCDC47-204ENST00000582252 DNAH3Q8TD57 4116 aa16.05■□□□□ 0.16
CCDC47-204ENST00000582252 C9orf118A6NHY6 69 aa16.05■□□□□ 0.16
CCDC47-204ENST00000582252 H7C423 109 aa16.05■□□□□ 0.16
CCDC47-204ENST00000582252 LYRM9A8MSI8 78 aa16.04■□□□□ 0.16
CCDC47-204ENST00000582252 UBE2L6O14933 153 aa16.04■□□□□ 0.16
CCDC47-204ENST00000582252 UBE2V1Q13404 147 aa16.04■□□□□ 0.16
CCDC47-204ENST00000582252 TMEM243Q9BU79 118 aa16.04■□□□□ 0.16
CCDC47-204ENST00000582252 NBEAL1Q6ZS30 2694 aa16.04■□□□□ 0.16
CCDC47-204ENST00000582252 DEFB130BP0DP73 79 aa16.03■□□□□ 0.16
CCDC47-204ENST00000582252 DEFB130AP0DP74 79 aa16.03■□□□□ 0.16
CCDC47-204ENST00000582252 RNASE13Q5GAN3 156 aaKnown RBP16.03■□□□□ 0.16
CCDC47-204ENST00000582252 NTM-AS1Q6ZSK4 140 aa16.03■□□□□ 0.16
CCDC47-204ENST00000582252 SBSPONQ8IVN8 264 aa16.03■□□□□ 0.16
CCDC47-204ENST00000582252 GEMIN7Q9H840 131 aaKnown RBP16.03■□□□□ 0.16
CCDC47-204ENST00000582252 UBE2D1P51668 147 aa16.02■□□□□ 0.15
CCDC47-204ENST00000582252 TSPEAR-AS2P59090 65 aa16.02■□□□□ 0.15
CCDC47-204ENST00000582252 KRTAP21-3Q3LHN1 58 aa16.02■□□□□ 0.15
CCDC47-204ENST00000582252 SAMD5Q5TGI4 173 aa16.02■□□□□ 0.15
CCDC47-204ENST00000582252 TMEM238LA0A1B0GVL6 79 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 A6NJY4 79 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 G3V4G9 280 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 TIRAPP58753 221 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 KRTAP10-11P60412 298 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 TMEM101Q96IK0 257 aa16.01■□□□□ 0.15
CCDC47-204ENST00000582252 SRSF9Q13242 221 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC47-204ENST00000582252 DEFB135Q30KP9 77 aa16■□□□□ 0.15
CCDC47-204ENST00000582252 AMMECR1LQ6DCA0 310 aa16■□□□□ 0.15
CCDC47-204ENST00000582252 OR5A1Q8NGJ0 315 aa16■□□□□ 0.15
CCDC47-204ENST00000582252 SPANXB1Q9NS25 103 aaPredicted RBP16■□□□□ 0.15
CCDC47-204ENST00000582252 NHP2Q9NX24 153 aaKnown RBP16■□□□□ 0.15
CCDC47-204ENST00000582252 A0A0J9YY99 117 aa15.99■□□□□ 0.15
CCDC47-204ENST00000582252 LOC100131303A0A0U1RQF7 123 aa15.99■□□□□ 0.15
CCDC47-204ENST00000582252 RAB37Q96AX2 223 aa15.99■□□□□ 0.15
CCDC47-204ENST00000582252 IGHV1-58A0A0C4DH39 117 aa15.98■□□□□ 0.15
CCDC47-204ENST00000582252 LINC00694P0DN24 101 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 HERVK_113P63121 156 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 FAM19A3Q7Z5A8 133 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 H3BUT2 72 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 K7EP13 123 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 MIFP14174 115 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 FAM222AQ5U5X8 452 aa15.97■□□□□ 0.15
CCDC47-204ENST00000582252 IGHV3-64A0A075B6Q5 118 aa15.96■□□□□ 0.15
CCDC47-204ENST00000582252 IGHV3-30-3P0DP02 117 aa15.96■□□□□ 0.15
CCDC47-204ENST00000582252 PRO0255Q9UI72 69 aa15.96■□□□□ 0.15
CCDC47-204ENST00000582252 IGLV5-45A0A087WSX0 123 aa15.95■□□□□ 0.14
CCDC47-204ENST00000582252 CDC42SE2Q9NRR3 84 aa15.95■□□□□ 0.14
CCDC47-204ENST00000582252 IGHV4-30-4P0DP06 118 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 GTF2H5Q6ZYL4 71 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 TRBV6-8A0A0A6YYG3 113 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 CCL25O15444 150 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 C12orf74Q32Q52 190 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 VSIG2Q96IQ7 327 aa15.94■□□□□ 0.14
CCDC47-204ENST00000582252 IGHV4-28A0A0C4DH34 117 aa15.93■□□□□ 0.14
CCDC47-204ENST00000582252 A0A1B0GWB2 263 aa15.92■□□□□ 0.14
CCDC47-204ENST00000582252 TMEM238C9JI98 176 aa15.92■□□□□ 0.14
CCDC47-204ENST00000582252 A0A1W2PPM0 123 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 GYPEP15421 78 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 RNF183Q96D59 192 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 GAGE10A6NGK3 116 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 K7ERJ3 54 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 FABP2P12104 132 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 ATP6V0E2Q8NHE4 81 aa15.91■□□□□ 0.14
CCDC47-204ENST00000582252 TRAV8-3A0A0A6YYJ7 113 aa15.9■□□□□ 0.14
CCDC47-204ENST00000582252 A8MZ25 164 aa15.9■□□□□ 0.14
CCDC47-204ENST00000582252 SPINK8P0C7L1 97 aa15.9■□□□□ 0.14
CCDC47-204ENST00000582252 DAD1P61803 113 aa15.9■□□□□ 0.14
CCDC47-204ENST00000582252 CDKN2A-AS1Q9UH64 79 aa15.9■□□□□ 0.14
CCDC47-204ENST00000582252 LINC00242Q5T6M2 205 aa15.89■□□□□ 0.13
CCDC47-204ENST00000582252 KPRPQ5T749 579 aaPredicted RBP15.89■□□□□ 0.13
CCDC47-204ENST00000582252 Q8NAQ8 132 aa15.89■□□□□ 0.13
CCDC47-204ENST00000582252 DNHD1Q96M86 4753 aa15.89■□□□□ 0.13
CCDC47-204ENST00000582252 CHCHD5Q9BSY4 110 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 NDUFA12Q9UI09 145 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 TRAV13-1A0A0B4J241 112 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 PAX4O43316 350 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 IGHV3-30P01768 117 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 IGHV3-30-5P0DP03 117 aa15.88■□□□□ 0.13
CCDC47-204ENST00000582252 A0A0J9YXY3 114 aa15.87■□□□□ 0.13
CCDC47-204ENST00000582252 GAGE6Q13070 117 aa15.87■□□□□ 0.13
CCDC47-204ENST00000582252 ZFAND6Q6FIF0 208 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms