RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 C14orf177Q52M58 125 aa13.07□□□□□ -0.32
SS18-218ENST00000581021 OR5A1Q8NGJ0 315 aa13.07□□□□□ -0.32
SS18-218ENST00000581021 PPBPP02775 128 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 C10orf91Q5T1B1 145 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 ORMDL3Q8N138 153 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 CHCHD10Q8WYQ3 142 aaPredicted RBP13.06□□□□□ -0.32
SS18-218ENST00000581021 BTF3L4Q96K17 158 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 KIR2DL4Q99706 377 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 CDC42SE2Q9NRR3 84 aa13.06□□□□□ -0.32
SS18-218ENST00000581021 PHOX2AO14813 284 aa13.05□□□□□ -0.32
SS18-218ENST00000581021 TMEM136Q6ZRR5 245 aa13.05□□□□□ -0.32
SS18-218ENST00000581021 PRELID3AQ96N28 172 aa13.05□□□□□ -0.32
SS18-218ENST00000581021 IMMP2LQ96T52 175 aa13.05□□□□□ -0.32
SS18-218ENST00000581021 UBE2D4Q9Y2X8 147 aa13.05□□□□□ -0.32
SS18-218ENST00000581021 C15orf56Q8N910 161 aa13.04□□□□□ -0.32
SS18-218ENST00000581021 TMEM101Q96IK0 257 aa13.04□□□□□ -0.32
SS18-218ENST00000581021 LINC00959A0A1B0GUT2 108 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 TCAPO15273 167 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 RPL39P62891 51 aaKnown RBP13.03□□□□□ -0.32
SS18-218ENST00000581021 FOXI1Q12951 378 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 ZNF664Q8N3J9 261 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 FAM104AQ969W3 186 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 CTDSP1Q9GZU7 261 aa13.03□□□□□ -0.32
SS18-218ENST00000581021 CARHSP1Q9Y2V2 147 aaKnown RBP13.03□□□□□ -0.32
SS18-218ENST00000581021 SMR3BP02814 79 aaPredicted RBP13.02□□□□□ -0.33
SS18-218ENST00000581021 SLPIP03973 132 aa13.02□□□□□ -0.33
SS18-218ENST00000581021 RNASE13Q5GAN3 156 aaKnown RBP13.02□□□□□ -0.33
SS18-218ENST00000581021 Q6ZUT4 128 aa13.02□□□□□ -0.33
SS18-218ENST00000581021 XCL1P47992 114 aa13.01□□□□□ -0.33
SS18-218ENST00000581021 CSDC2Q9Y534 153 aaKnown RBP13.01□□□□□ -0.33
SS18-218ENST00000581021 VPS13BQ7Z7G8 4022 aa13□□□□□ -0.33
SS18-218ENST00000581021 hDV102S1A0JD36 115 aa13□□□□□ -0.33
SS18-218ENST00000581021 CCL25O15444 150 aa12.99□□□□□ -0.33
SS18-218ENST00000581021 CLRN3Q8NCR9 226 aa12.99□□□□□ -0.33
SS18-218ENST00000581021 TIMM21Q9BVV7 248 aa12.99□□□□□ -0.33
SS18-218ENST00000581021 PRSS47A8MTI9 375 aa12.98□□□□□ -0.33
SS18-218ENST00000581021 CNBPP62633 177 aaKnown RBP12.98□□□□□ -0.33
SS18-218ENST00000581021 DGAT2L7PQ6IED9 249 aa12.98□□□□□ -0.33
SS18-218ENST00000581021 SCXQ7RTU7 201 aa12.98□□□□□ -0.33
SS18-218ENST00000581021 LOC389332A0A1B0GUA5 103 aa12.97□□□□□ -0.33
SS18-218ENST00000581021 HIGD2BQ4VC39 106 aa12.97□□□□□ -0.33
SS18-218ENST00000581021 C9orf163Q8N9P6 203 aa12.97□□□□□ -0.33
SS18-218ENST00000581021 OPRPNQ99935 248 aaPredicted RBP12.97□□□□□ -0.33
SS18-218ENST00000581021 LAMTOR2Q9Y2Q5 125 aa12.97□□□□□ -0.33
SS18-218ENST00000581021 TRAV9-1A0A075B6T8 112 aa12.96□□□□□ -0.33
SS18-218ENST00000581021 Q5VSD8 79 aa12.96□□□□□ -0.33
SS18-218ENST00000581021 EPM2AB3EWF7 344 aa12.95□□□□□ -0.34
SS18-218ENST00000581021 KIAA1644Q3SXP7 199 aa12.95□□□□□ -0.34
SS18-218ENST00000581021 MAP1LC3AQ9H492 121 aa12.95□□□□□ -0.34
SS18-218ENST00000581021 GVQW2A0A096LPI5 108 aaPredicted RBP12.94□□□□□ -0.34
SS18-218ENST00000581021 PANO1I0J062 215 aa12.94□□□□□ -0.34
SS18-218ENST00000581021 RHEBQ15382 184 aa12.94□□□□□ -0.34
SS18-218ENST00000581021 CHAC1Q9BUX1 264 aa12.94□□□□□ -0.34
SS18-218ENST00000581021 SPANXA1Q9NS26 97 aa12.94□□□□□ -0.34
SS18-218ENST00000581021 TRAV13-1A0A0B4J241 112 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 SS18Q15532 418 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 CD164L2Q6UWJ8 174 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 SDIM1Q6ZPB5 146 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 Q8N8P6 123 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 TMEM18Q96B42 140 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 RPS10P5Q9NQ39 176 aa12.93□□□□□ -0.34
SS18-218ENST00000581021 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.93□□□□□ -0.34
SS18-218ENST00000581021 SRRM2Q9UQ35 2752 aaKnown RBP12.92□□□□□ -0.34
SS18-218ENST00000581021 SMAGPQ0VAQ4 97 aa12.92□□□□□ -0.34
SS18-218ENST00000581021 CIRBP-AS1Q8TBR5 109 aa12.92□□□□□ -0.34
SS18-218ENST00000581021 RAB5AP20339 215 aa12.91□□□□□ -0.34
SS18-218ENST00000581021 S100PP25815 95 aa12.91□□□□□ -0.34
SS18-218ENST00000581021 MRPS36P82909 103 aaKnown RBP12.91□□□□□ -0.34
SS18-218ENST00000581021 CFAP161Q6P656 301 aa12.91□□□□□ -0.34
SS18-218ENST00000581021 LINC00526Q96FQ7 95 aa12.91□□□□□ -0.34
SS18-218ENST00000581021 C1orf196B1AJZ1 125 aa12.9□□□□□ -0.34
SS18-218ENST00000581021 AP5S1Q9NUS5 200 aa12.9□□□□□ -0.34
SS18-218ENST00000581021 APOC3P02656 99 aa12.89□□□□□ -0.35
SS18-218ENST00000581021 IFI27P40305 119 aaPredicted RBP12.89□□□□□ -0.35
SS18-218ENST00000581021 GNB1LQ9BYB4 327 aa12.89□□□□□ -0.35
SS18-218ENST00000581021 IGLV4-3A0A075B6K6 122 aa12.88□□□□□ -0.35
SS18-218ENST00000581021 IGHV1-58A0A0C4DH39 117 aa12.88□□□□□ -0.35
SS18-218ENST00000581021 LINC00528Q8N1L1 170 aa12.87□□□□□ -0.35
SS18-218ENST00000581021 PYGO1Q9Y3Y4 419 aa12.87□□□□□ -0.35
SS18-218ENST00000581021 TGIF2-C20orf24A0A0A6YYL0 155 aa12.86□□□□□ -0.35
SS18-218ENST00000581021 COX7A2LO14548 114 aa12.86□□□□□ -0.35
SS18-218ENST00000581021 CHTF8P0CG12 524 aa12.86□□□□□ -0.35
SS18-218ENST00000581021 C2orf66Q6UXQ4 117 aa12.86□□□□□ -0.35
SS18-218ENST00000581021 ALKBH7Q9BT30 221 aaPredicted RBP12.86□□□□□ -0.35
SS18-218ENST00000581021 IGHV3-64A0A075B6Q5 118 aa12.85□□□□□ -0.35
SS18-218ENST00000581021 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.85□□□□□ -0.35
SS18-218ENST00000581021 IFITM10A6NMD0 228 aa12.85□□□□□ -0.35
SS18-218ENST00000581021 CIRBPQ14011 172 aaKnown RBP12.85□□□□□ -0.35
SS18-218ENST00000581021 ZC2HC1BQ5TFG8 222 aa12.85□□□□□ -0.35
SS18-218ENST00000581021 C5orf38Q86SI9 138 aa12.85□□□□□ -0.35
SS18-218ENST00000581021 NXT2Q9NPJ8 142 aaKnown RBP12.85□□□□□ -0.35
SS18-218ENST00000581021 MYCBP2O75592 4640 aa12.84□□□□□ -0.35
SS18-218ENST00000581021 LINC00173Q6ZV60 143 aa12.84□□□□□ -0.35
SS18-218ENST00000581021 MRPL18Q9H0U6 180 aaKnown RBP12.84□□□□□ -0.35
SS18-218ENST00000581021 CYSLTR1Q9Y271 337 aa12.84□□□□□ -0.35
SS18-218ENST00000581021 FAM229AH3BQW9 127 aa12.83□□□□□ -0.36
SS18-218ENST00000581021 ORMDL2Q53FV1 153 aa12.83□□□□□ -0.36
SS18-218ENST00000581021 SVBPQ8N300 66 aa12.83□□□□□ -0.36
SS18-218ENST00000581021 IGHV3OR16-9A0A0B4J2B5 98 aa12.82□□□□□ -0.36
SS18-218ENST00000581021 IGIPA6NJ69 53 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms