RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TIRAPP58753 221 aa16.35■□□□□ 0.21
VPS53-211ENST00000571805 ZFAND6Q6FIF0 208 aa16.35■□□□□ 0.21
VPS53-211ENST00000571805 TEX29Q8N6K0 151 aa16.35■□□□□ 0.21
VPS53-211ENST00000571805 CDKN2A-AS1Q9UH64 79 aa16.35■□□□□ 0.21
VPS53-211ENST00000571805 PRSS2P07478 247 aa16.34■□□□□ 0.21
VPS53-211ENST00000571805 SMAGPQ0VAQ4 97 aa16.34■□□□□ 0.21
VPS53-211ENST00000571805 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.34■□□□□ 0.21
VPS53-211ENST00000571805 CUBNO60494 3623 aa16.34■□□□□ 0.21
VPS53-211ENST00000571805 SCGB1A1P11684 91 aa16.34■□□□□ 0.21
VPS53-211ENST00000571805 MIAQ16674 131 aa16.33■□□□□ 0.2
VPS53-211ENST00000571805 PPDPFLQ8WWR9 84 aa16.33■□□□□ 0.2
VPS53-211ENST00000571805 COX6A2Q02221 97 aa16.31■□□□□ 0.2
VPS53-211ENST00000571805 DGAT2L7PQ6IED9 249 aa16.31■□□□□ 0.2
VPS53-211ENST00000571805 Q6ZTI0 123 aa16.31■□□□□ 0.2
VPS53-211ENST00000571805 CITED2Q99967 270 aaPredicted RBP16.31■□□□□ 0.2
VPS53-211ENST00000571805 TMEM101Q96IK0 257 aa16.31■□□□□ 0.2
VPS53-211ENST00000571805 FLNAP21333 2647 aaKnown RBP16.31■□□□□ 0.2
VPS53-211ENST00000571805 CDIP1Q9H305 208 aa16.3■□□□□ 0.2
VPS53-211ENST00000571805 TRBV30A0A0K0K1B3 111 aa16.3■□□□□ 0.2
VPS53-211ENST00000571805 LINC00694P0DN24 101 aa16.3■□□□□ 0.2
VPS53-211ENST00000571805 Q1RN00 199 aa16.3■□□□□ 0.2
VPS53-211ENST00000571805 ANKRD29Q8N6D5 301 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 TRBV10-1A0A0K0K1A3 114 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 K7EQD1 137 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 SLC25A20O43772 301 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 TIMM17BO60830 172 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 NTM-AS1Q6ZSK4 140 aa16.29■□□□□ 0.2
VPS53-211ENST00000571805 C9JAW5 83 aa16.28■□□□□ 0.2
VPS53-211ENST00000571805 M0QXV9 152 aa16.28■□□□□ 0.2
VPS53-211ENST00000571805 GIG44P09565 113 aaPredicted RBP16.28■□□□□ 0.2
VPS53-211ENST00000571805 NIPBLQ6KC79 2804 aaeCLIP16.28■□□□□ 0.2
VPS53-211ENST00000571805 RPL36AP83881 106 aaKnown RBP16.28■□□□□ 0.2
VPS53-211ENST00000571805 LINC00242Q5T6M2 205 aa16.28■□□□□ 0.2
VPS53-211ENST00000571805 RPL36ALQ969Q0 106 aaKnown RBP16.28■□□□□ 0.2
VPS53-211ENST00000571805 TRAV4A0A0B4J268 109 aa16.27■□□□□ 0.2
VPS53-211ENST00000571805 NDUFA1O15239 70 aa16.27■□□□□ 0.2
VPS53-211ENST00000571805 TRIAP1O43715 76 aa16.27■□□□□ 0.2
VPS53-211ENST00000571805 RNF183Q96D59 192 aa16.27■□□□□ 0.2
VPS53-211ENST00000571805 SETXQ7Z333 2677 aaKnown RBP16.27■□□□□ 0.19
VPS53-211ENST00000571805 HIST2H2BCQ6DN03 193 aa16.27■□□□□ 0.19
VPS53-211ENST00000571805 FAM19A3Q7Z5A8 133 aa16.27■□□□□ 0.19
VPS53-211ENST00000571805 NPC2P61916 151 aa16.26■□□□□ 0.19
VPS53-211ENST00000571805 CSDC2Q9Y534 153 aaKnown RBP16.26■□□□□ 0.19
VPS53-211ENST00000571805 IGLV5-39A0A0G2JS06 123 aa16.26■□□□□ 0.19
VPS53-211ENST00000571805 DAZ2Q13117 558 aaKnown RBP16.26■□□□□ 0.19
VPS53-211ENST00000571805 DAZ4Q86SG3 579 aaKnown RBP16.26■□□□□ 0.19
VPS53-211ENST00000571805 LINC01006Q8NI28 216 aa16.26■□□□□ 0.19
VPS53-211ENST00000571805 DAZ3Q9NR90 486 aaKnown RBP16.26■□□□□ 0.19
VPS53-211ENST00000571805 CCDC168Q8NDH2 2452 aa16.25■□□□□ 0.19
VPS53-211ENST00000571805 HERVK_113P63121 156 aa16.25■□□□□ 0.19
VPS53-211ENST00000571805 ATXN8Q156A1 80 aa16.25■□□□□ 0.19
VPS53-211ENST00000571805 NDUFA7O95182 113 aa16.24■□□□□ 0.19
VPS53-211ENST00000571805 YAE1D1Q9NRH1 226 aa16.24■□□□□ 0.19
VPS53-211ENST00000571805 KRTAP1-1Q07627 177 aa16.24■□□□□ 0.19
VPS53-211ENST00000571805 NOP10Q9NPE3 64 aaKnown RBP16.24■□□□□ 0.19
VPS53-211ENST00000571805 LINC01620Q4KN68 170 aa16.23■□□□□ 0.19
VPS53-211ENST00000571805 IFITM1P13164 125 aa16.23■□□□□ 0.19
VPS53-211ENST00000571805 C16orf95Q9H693 158 aa16.23■□□□□ 0.19
VPS53-211ENST00000571805 ICOSQ9Y6W8 199 aa16.23■□□□□ 0.19
VPS53-211ENST00000571805 PLAC8L1A1L4L8 177 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 GAGE12JA6NER3 117 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 CMC4P56277 68 aaPredicted RBP16.22■□□□□ 0.19
VPS53-211ENST00000571805 GAGE4Q13068 117 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 GAGE5Q13069 117 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 DAND5Q8N907 189 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 LINC01600Q96MT4 127 aa16.22■□□□□ 0.19
VPS53-211ENST00000571805 TENM4Q6N022 2769 aa16.21■□□□□ 0.19
VPS53-211ENST00000571805 WFDC10AQ9H1F0 79 aa16.21■□□□□ 0.19
VPS53-211ENST00000571805 SETD2Q9BYW2 2564 aaPredicted RBP16.21■□□□□ 0.19
VPS53-211ENST00000571805 CDC42SE2Q9NRR3 84 aa16.21■□□□□ 0.19
VPS53-211ENST00000571805 C19orf73Q9NVV2 129 aa16.21■□□□□ 0.19
VPS53-211ENST00000571805 PDZD2O15018 2839 aa16.2■□□□□ 0.18
VPS53-211ENST00000571805 SMIM1B2RUZ4 78 aa16.2■□□□□ 0.18
VPS53-211ENST00000571805 RNASE1P07998 156 aaKnown RBP16.2■□□□□ 0.18
VPS53-211ENST00000571805 JMJD1CQ15652 2540 aa16.19■□□□□ 0.18
VPS53-211ENST00000571805 Q9H8V8 135 aa16.19■□□□□ 0.18
VPS53-211ENST00000571805 TRAV13-1A0A0B4J241 112 aa16.19■□□□□ 0.18
VPS53-211ENST00000571805 IGLV1-51P01701 117 aa16.19■□□□□ 0.18
VPS53-211ENST00000571805 C16orf74Q96GX8 76 aa16.18■□□□□ 0.18
VPS53-211ENST00000571805 FAM110AQ9BQ89 295 aa16.18■□□□□ 0.18
VPS53-211ENST00000571805 ANK3Q12955 4377 aaKnown RBP16.17■□□□□ 0.18
VPS53-211ENST00000571805 CIRBPQ14011 172 aaKnown RBP16.17■□□□□ 0.18
VPS53-211ENST00000571805 NOTCH3Q9UM47 2321 aa16.17■□□□□ 0.18
VPS53-211ENST00000571805 TRBV10-2A0A0K0K1G8 114 aa16.16■□□□□ 0.18
VPS53-211ENST00000571805 CSNK1G2-AS1Q8NCQ2 148 aa16.16■□□□□ 0.18
VPS53-211ENST00000571805 F5H768 121 aa16.16■□□□□ 0.18
VPS53-211ENST00000571805 RPL35AP18077 110 aaKnown RBP16.16■□□□□ 0.18
VPS53-211ENST00000571805 XGP55808 180 aa16.16■□□□□ 0.18
VPS53-211ENST00000571805 GAGE7O76087 117 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 MT-ATP8P03928 68 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 GAGE12FP0CL80 117 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 GAGE12GP0CL81 117 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 GAGE12IP0CL82 117 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 LINC00308Q8TCZ7 52 aa16.15■□□□□ 0.18
VPS53-211ENST00000571805 RPL13AP40429 203 aaKnown RBP16.14■□□□□ 0.17
VPS53-211ENST00000571805 NTN5Q8WTR8 489 aaPredicted RBP16.14■□□□□ 0.17
VPS53-211ENST00000571805 ZNF625Q96I27 306 aaPredicted RBP16.14■□□□□ 0.17
VPS53-211ENST00000571805 OVOL2Q9BRP0 275 aa16.14■□□□□ 0.17
VPS53-211ENST00000571805 ACANP16112 2415 aa16.14■□□□□ 0.17
VPS53-211ENST00000571805 COX6CP09669 75 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms