RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 VSIG2Q96IQ7 327 aa8.48□□□□□ -1.05
CLN3-238ENST00000569430 TMEM86BQ8N661 226 aa8.47□□□□□ -1.05
CLN3-238ENST00000569430 COX6B1P14854 86 aa8.47□□□□□ -1.05
CLN3-238ENST00000569430 DEFB112Q30KQ8 113 aa8.47□□□□□ -1.05
CLN3-238ENST00000569430 SLURP1P55000 103 aa8.46□□□□□ -1.05
CLN3-238ENST00000569430 DAZ2Q13117 558 aaKnown RBP8.46□□□□□ -1.05
CLN3-238ENST00000569430 DAZ4Q86SG3 579 aaKnown RBP8.46□□□□□ -1.05
CLN3-238ENST00000569430 DAZ3Q9NR90 486 aaKnown RBP8.46□□□□□ -1.05
CLN3-238ENST00000569430 H3BUA1 57 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 SOCS3O14543 225 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 ACYP1P07311 99 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 NSUN5P1Q3KNT7 163 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 LINC00467Q9BRT7 94 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 LINC01546A6NGU7 62 aa8.46□□□□□ -1.06
CLN3-238ENST00000569430 C5orf38Q86SI9 138 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 A0A1B0GX51 115 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 FHL3Q13643 280 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 ADAMTSL4-AS1Q5T5F5 129 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 POM121L12Q8N7R1 296 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 TRACP01848 142 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 ELANEP08246 267 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 SND1-IT1Q9HBX3 110 aa8.45□□□□□ -1.06
CLN3-238ENST00000569430 IGHV4-30-2A0A087WSY4 118 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 TRAV13-2A0A0B4J235 113 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 KLLNB2CW77 178 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 ATP5G1P05496 136 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 DEFB130BP0DP73 79 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 DEFB130AP0DP74 79 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 PIK3CD-AS1Q5SR53 167 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 TMEM61Q8N0U2 210 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 ZANQ9Y493 2812 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 TRBV6-5A0A0K0K1A5 114 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 CFAP161Q6P656 301 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 TMEM243Q9BU79 118 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 K7EMT4 169 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 LAMTOR3Q9UHA4 124 aa8.44□□□□□ -1.06
CLN3-238ENST00000569430 FBXL19-AS1Q494R0 122 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 CLPSL2Q6UWE3 100 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 LINC00643Q86TS7 51 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 TMEM126AQ9H061 195 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 ITPR1Q14643 2758 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 S100A7L2Q5SY68 101 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 C14orf132Q9NPU4 83 aa8.43□□□□□ -1.06
CLN3-238ENST00000569430 CFAP46Q8IYW2 2715 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 LST1O00453 97 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 SDIM1Q6ZPB5 146 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 MIR7-3HGQ8N6C7 128 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 LINC00308Q8TCZ7 52 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 COX7A2LO14548 114 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 MALP21145 153 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 NRGNQ92686 78 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 NOP10Q9NPE3 64 aaKnown RBP8.42□□□□□ -1.06
CLN3-238ENST00000569430 LECT2O14960 151 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 HIST2H2BDQ6DRA6 164 aa8.42□□□□□ -1.06
CLN3-238ENST00000569430 HTN3P15516 51 aa8.41□□□□□ -1.06
CLN3-238ENST00000569430 K7EQG2 157 aa8.41□□□□□ -1.06
CLN3-238ENST00000569430 C11orf71Q6IPW1 123 aa8.41□□□□□ -1.06
CLN3-238ENST00000569430 OVOL2Q9BRP0 275 aa8.41□□□□□ -1.06
CLN3-238ENST00000569430 EPG5Q9HCE0 2579 aa8.4□□□□□ -1.06
CLN3-238ENST00000569430 A0A096LPF7 62 aa8.4□□□□□ -1.06
CLN3-238ENST00000569430 RNF223E7ERA6 249 aa8.4□□□□□ -1.06
CLN3-238ENST00000569430 HAMPP81172 84 aa8.4□□□□□ -1.06
CLN3-238ENST00000569430 A6NDX4 124 aa8.4□□□□□ -1.07
CLN3-238ENST00000569430 DCANP1Q8TF63 244 aa8.4□□□□□ -1.07
CLN3-238ENST00000569430 KIF25-AS1Q9Y6Z4 181 aa8.39□□□□□ -1.07
CLN3-238ENST00000569430 A0A1W2PPR1 153 aa8.39□□□□□ -1.07
CLN3-238ENST00000569430 NDUFA7O95182 113 aa8.39□□□□□ -1.07
CLN3-238ENST00000569430 XCL1P47992 114 aa8.39□□□□□ -1.07
CLN3-238ENST00000569430 C9orf85Q96MD7 179 aa8.39□□□□□ -1.07
CLN3-238ENST00000569430 MUC4Q99102 2169 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 hADV29S1A0JD25 119 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 LINC00315P59091 139 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 SHISA2Q6UWI4 295 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 ODF3Q96PU9 254 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 ATOX1O00244 68 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 SLPIP03973 132 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 DNAJC30Q96LL9 226 aa8.38□□□□□ -1.07
CLN3-238ENST00000569430 MRPS36P82909 103 aaKnown RBP8.37□□□□□ -1.07
CLN3-238ENST00000569430 LINC01356Q8N9X3 169 aa8.37□□□□□ -1.07
CLN3-238ENST00000569430 UQCRQO14949 82 aa8.37□□□□□ -1.07
CLN3-238ENST00000569430 PYGO1Q9Y3Y4 419 aa8.37□□□□□ -1.07
CLN3-238ENST00000569430 J3KT08 172 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 SPANXDQ9BXN6 97 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 SPANXCQ9NY87 97 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 HIST2H2BCQ6DN03 193 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 C3orf22Q8N5N4 141 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 UBL5Q9BZL1 73 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 KLK5Q9Y337 293 aaPredicted RBP8.36□□□□□ -1.07
CLN3-238ENST00000569430 ACANP16112 2415 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 C19orf84I3L1E1 186 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 Q6Q795 121 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 C10orf105Q8TEF2 133 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 COX7B2Q8TF08 81 aa8.36□□□□□ -1.07
CLN3-238ENST00000569430 NDUFA1O15239 70 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 LINC00694P0DN24 101 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 TIRAPP58753 221 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 UBE2D4Q9Y2X8 147 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 PRB1P04280 392 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 ZNF575Q86XF7 245 aa8.35□□□□□ -1.07
CLN3-238ENST00000569430 ORMDL1Q9P0S3 153 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms