RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 KRTAP26-1Q6PEX3 210 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST3H2BBQ8N257 126 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 LINC00269Q8N2A0 174 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 C20orf203Q8NBC4 194 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 RPL39LQ96EH5 51 aaKnown RBP6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 TMEM243Q9BU79 118 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 TMEM70Q9BUB7 260 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 FAM30AQ9NZY2 134 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 V9GYV3 84 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 A0A1B0GUT8 65 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 A0A1B0GUV1 79 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 CRPP02741 224 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 MIAQ16674 131 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 SMIM15Q7Z3B0 74 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 C1orf43Q9BWL3 253 aa6.73□□□□□ -1.33
CCDC88C-206ENST00000553437 VPS13BQ7Z7G8 4022 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 IGLV4-60A0A075B6I1 120 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 IFITM10A6NMD0 228 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 GAS8-AS1O95177 125 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 COTL1Q14019 142 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 COA6Q5JTJ3 125 aaKnown RBP6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 CLPSL2Q6UWE3 100 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 NUP35Q8NFH5 326 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 RNF185Q96GF1 192 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 TMEM191AQ9H0A3 160 aa6.72□□□□□ -1.33
CCDC88C-206ENST00000553437 SRRM2Q9UQ35 2752 aaKnown RBP6.71□□□□□ -1.33
CCDC88C-206ENST00000553437 TRBV6-5A0A0K0K1A5 114 aa6.71□□□□□ -1.34
CCDC88C-206ENST00000553437 AMTP48728 403 aa6.71□□□□□ -1.34
CCDC88C-206ENST00000553437 HAMPP81172 84 aa6.71□□□□□ -1.34
CCDC88C-206ENST00000553437 Q6ZSA8 131 aa6.71□□□□□ -1.34
CCDC88C-206ENST00000553437 BORCS7Q96B45 105 aa6.71□□□□□ -1.34
CCDC88C-206ENST00000553437 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 SDHAF1A6NFY7 115 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 EPM2AB3EWF7 344 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 NCR2O95944 276 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 SMR3BP02814 79 aaPredicted RBP6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 RAB4AP20338 218 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 REG3AQ06141 175 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 LINC01620Q4KN68 170 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 OR10D4PQ8NGN7 298 aa6.7□□□□□ -1.34
CCDC88C-206ENST00000553437 SMIM27A0A1W2PRY6 76 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 USP17L23D6RBM5 183 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 HLA-DQA1P01909 254 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 RIGQ13278 110 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 COX19Q49B96 90 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 AMN1Q8IY45 258 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 NAT8BQ9UHF3 227 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 TRAPPC1Q9Y5R8 145 aa6.69□□□□□ -1.34
CCDC88C-206ENST00000553437 IGLV10-54A0A075B6I4 117 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 TRAV8-4A0A0B4J246 113 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 I3L3M4 83 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 UBE2L6O14933 153 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 PRSS1P07477 247 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 FABP4P15090 132 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 POLR2KP53803 58 aaKnown RBP6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 CTAG1AP78358 180 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 C14orf177Q52M58 125 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 PYY3Q5JQD4 70 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 Q5VSD8 79 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 MRAP2Q96G30 205 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 PACRGQ96M98 296 aaPredicted RBP6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 HIST1H2BLQ99880 126 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 ST20Q9HBF5 79 aa6.68□□□□□ -1.34
CCDC88C-206ENST00000553437 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 IGKV2-29A2NJV5 120 aaPredicted RBP6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 H7C423 109 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 TSHBP01222 138 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 APCSP02743 223 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 ESDP10768 282 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 PMCHP20382 165 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 C4orf48Q5BLP8 95 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 PDZD11Q5EBL8 140 aa6.67□□□□□ -1.34
CCDC88C-206ENST00000553437 TRBV27A0A0K0K1C4 114 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 SMKR1H3BMG3 65 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 FGF6P10767 208 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 FAM104BQ5XKR9 115 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 NRACQ8N912 160 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 TMEM18Q96B42 140 aa6.66□□□□□ -1.34
CCDC88C-206ENST00000553437 LINC00587B1AMM8 73 aa6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 MT-ND6P03923 174 aa6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 JOSD1Q15040 202 aaPredicted RBP6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 MRPL51Q4U2R6 128 aaKnown RBP6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 DGAT2L7PQ6IED9 249 aa6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 LINC00528Q8N1L1 170 aa6.65□□□□□ -1.34
CCDC88C-206ENST00000553437 A0A1B0GW15 77 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 A0A1B0GXF2 115 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 VCYO14598 125 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 CAMPP49913 170 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 AMMECR1LQ6DCA0 310 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 RNASEKQ6P5S7 137 aaKnown RBP6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 SCXQ7RTU7 201 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 C9orf163Q8N9P6 203 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 CHAC1Q9BUX1 264 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 GNB1LQ9BYB4 327 aa6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 MRPL18Q9H0U6 180 aaKnown RBP6.64□□□□□ -1.35
CCDC88C-206ENST00000553437 IGKV3OR2-268A0A0C4DH90 116 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 GAGE12HA6NDE8 117 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 FAM229AH3BQW9 127 aa6.63□□□□□ -1.35
CCDC88C-206ENST00000553437 PPP1R17O96001 155 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms