RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	CLPSL2	Q6UWE3	100 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	LINC00269	Q8N2A0	174 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	GATD1	Q8NB37	220 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	TSKU	Q8WUA8	353 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	BORCS7	Q96B45	105 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	TRAV8-4	A0A0B4J246	113 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	TRAV26-2	A0A0B4J265	109 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	HIGD1C	A8MV81	97 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	UBE2L6	O14933	153 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	NCR2	O95944	276 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	SRP19	P09132	144 aa	Known RBP	5	□□□□□ -1.61
SNHG1-223	ENST00000545440	HAMP	P81172	84 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	UBE2V1	Q13404	147 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	KRTAP26-1	Q6PEX3	210 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	C20orf203	Q8NBC4	194 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	OSTC	Q9NRP0	149 aa		5	□□□□□ -1.61
SNHG1-223	ENST00000545440	FLG2	Q5D862	2391 aa	Predicted RBP	4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440		A0A1B0GUT8	65 aa		4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440		H7C423	109 aa		4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	SMR3B	P02814	79 aa	Predicted RBP	4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	FAM74A3	Q4VXF1	159 aa		4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	ISOC2	Q96AB3	205 aa		4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	RPL39L	Q96EH5	51 aa	Known RBP	4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	SMDT1	Q9H4I9	107 aa		4.99	□□□□□ -1.61
SNHG1-223	ENST00000545440	FAT1	Q14517	4588 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	IGLV4-60	A0A075B6I1	120 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	TRBV6-5	A0A0K0K1A5	114 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	SDHAF1	A6NFY7	115 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	APCS	P02743	223 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	INAFM2	P0DMQ5	153 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	LINC01620	Q4KN68	170 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	SCX	Q7RTU7	201 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	TMEM191A	Q9H0A3	160 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440		V9GYV3	84 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	DNAH8	Q96JB1	4490 aa		4.98	□□□□□ -1.61
SNHG1-223	ENST00000545440	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	IGLV10-54	A0A075B6I4	117 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	IGKV2D-30	A0A075B6S6	120 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440		I3L3M4	83 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	PRSS1	P07477	247 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	ZNF25	P17030	456 aa	Predicted RBP	4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	RPL23	P62829	140 aa	Known RBP	4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	TMEM241	Q24JQ0	296 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	MRAP2	Q96G30	205 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	CHAC1	Q9BUX1	264 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	NAT8	Q9UHE5	227 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	NAT8B	Q9UHF3	227 aa		4.97	□□□□□ -1.61
SNHG1-223	ENST00000545440	CNBP	P62633	177 aa	Known RBP	4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	RIG	Q13278	110 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	PEA15	Q15121	130 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	ADIRF	Q15847	76 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	AMMECR1L	Q6DCA0	310 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440		Q8N9P0	234 aa	Predicted RBP	4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	C9orf163	Q8N9P6	203 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	NUP35	Q8NFH5	326 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	DEFB104A	Q8WTQ1	72 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	RNF185	Q96GF1	192 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	ST20	Q9HBF5	79 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	VPS13B	Q7Z7G8	4022 aa		4.96	□□□□□ -1.62
SNHG1-223	ENST00000545440	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	TRBV27	A0A0K0K1C4	114 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	SMIM27	A0A1W2PRY6	76 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	IGKV2-29	A2NJV5	120 aa	Predicted RBP	4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440		C9JQL5	133 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	PPP1R17	O96001	155 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	TSHB	P01222	138 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	FGF6	P10767	208 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	RAB4A	P20338	218 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	PMCH	P20382	165 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	RPS10	P46783	165 aa	Known RBP	4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	RNASEK	Q6P5S7	137 aa	Known RBP	4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	AMN1	Q8IY45	258 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440	CIRBP-AS1	Q8TBR5	109 aa		4.95	□□□□□ -1.62
SNHG1-223	ENST00000545440		A0A1B0GW15	77 aa		4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	GAS8-AS1	O95177	125 aa		4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	ESD	P10768	282 aa		4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	POLR2K	P53803	58 aa	Known RBP	4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	BTF3L4	Q96K17	158 aa		4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	TMEM242	Q9NWH2	141 aa		4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	SRRM2	Q9UQ35	2752 aa	Known RBP	4.94	□□□□□ -1.62
SNHG1-223	ENST00000545440	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	C7orf77	A4D0Y5	90 aa		4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	PPP1R2P9	O14990	202 aa		4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	MRPL52	Q86TS9	123 aa	Known RBP	4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	C15orf56	Q8N910	161 aa		4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	OR5A1	Q8NGJ0	315 aa		4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	TMEM101	Q96IK0	257 aa		4.93	□□□□□ -1.62
SNHG1-223	ENST00000545440	GVQW2	A0A096LPI5	108 aa	Predicted RBP	4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	IGKV3OR2-268	A0A0C4DH90	116 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	LINC00862	A6NCI5	91 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	S100A8	P05109	93 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	SMAGP	Q0VAQ4	97 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	CIRBP	Q14011	172 aa	Known RBP	4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	FAM104B	Q5XKR9	115 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	SDIM1	Q6ZPB5	146 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	KIR2DL4	Q99706	377 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	KRTAP4-2	Q9BYR5	136 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	MYCBP2	O75592	4640 aa		4.92	□□□□□ -1.62
SNHG1-223	ENST00000545440	TRBV24-1	A0A075B6N3	115 aa		4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 159.9 ms