RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 LINC00474Q9P2X8 69 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 MUC2Q02817 5179 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 CAMPP49913 170 aa9.47□□□□□ -0.89
CLSTN3-213ENST00000541953 RNASE13Q5GAN3 156 aaKnown RBP9.47□□□□□ -0.89
CLSTN3-213ENST00000541953 TEX46H3BTG2 121 aa9.46□□□□□ -0.9
CLSTN3-213ENST00000541953 CD164L2Q6UWJ8 174 aa9.46□□□□□ -0.9
CLSTN3-213ENST00000541953 TMEM101Q96IK0 257 aa9.46□□□□□ -0.9
CLSTN3-213ENST00000541953 BTF3L4Q96K17 158 aa9.46□□□□□ -0.9
CLSTN3-213ENST00000541953 PSORS1C2Q9UIG4 136 aa9.46□□□□□ -0.9
CLSTN3-213ENST00000541953 ZNF561-AS1K7EIQ3 104 aa9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 GATCO43716 136 aaKnown RBP9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 POLR2KP53803 58 aaKnown RBP9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 MRPL52Q86TS9 123 aaKnown RBP9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 ZNF664Q8N3J9 261 aa9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 NUP35Q8NFH5 326 aa9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 MRAP2Q96G30 205 aa9.45□□□□□ -0.9
CLSTN3-213ENST00000541953 SMKR1H3BMG3 65 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 SS18Q15532 418 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 TEX261Q6UWH6 196 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 PHF5AQ7RTV0 110 aaKnown RBP9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 SMIM15Q7Z3B0 74 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 KRTAP11-1Q8IUC1 163 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 ST20Q9HBF5 79 aa9.44□□□□□ -0.9
CLSTN3-213ENST00000541953 LOC107984640A0A0U1RRK4 108 aa9.43□□□□□ -0.9
CLSTN3-213ENST00000541953 C9orf116Q5BN46 136 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-213ENST00000541953 TRBV27A0A0K0K1C4 114 aa9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 C7orf77A4D0Y5 90 aa9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 EIF5AL1Q6IS14 154 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 FAM231DQ6ZW35 169 aa9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 AMN1Q8IY45 258 aa9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 OPRPNQ99935 248 aaPredicted RBP9.42□□□□□ -0.9
CLSTN3-213ENST00000541953 RAB4AP20338 218 aa9.41□□□□□ -0.9
CLSTN3-213ENST00000541953 Q6ZUT4 128 aa9.41□□□□□ -0.9
CLSTN3-213ENST00000541953 PRR26Q8N8Z3 221 aa9.41□□□□□ -0.9
CLSTN3-213ENST00000541953 UBE2D4Q9Y2X8 147 aa9.41□□□□□ -0.9
CLSTN3-213ENST00000541953 A8MWL6 223 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 COX7A2LO14548 114 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 APOMO95445 188 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 RPL18AQ02543 176 aaKnown RBP9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 C1orf137Q5JT78 98 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 C5orf38Q86SI9 138 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 NRACQ8N912 160 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 CAMK2N2Q96S95 79 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 TMEM191AQ9H0A3 160 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.9
CLSTN3-213ENST00000541953 TRAV13-1A0A0B4J241 112 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 FAM168BA1KXE4 195 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 HIGD1CA8MV81 97 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 MT-ND6P03923 174 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 SLC51BQ86UW2 128 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 FAM104AQ969W3 186 aa9.39□□□□□ -0.91
CLSTN3-213ENST00000541953 MALP21145 153 aa9.38□□□□□ -0.91
CLSTN3-213ENST00000541953 CEBPGP53567 150 aa9.38□□□□□ -0.91
CLSTN3-213ENST00000541953 CT83Q5H943 113 aa9.38□□□□□ -0.91
CLSTN3-213ENST00000541953 ISOC2Q96AB3 205 aa9.38□□□□□ -0.91
CLSTN3-213ENST00000541953 A0A1B0GUT8 65 aa9.37□□□□□ -0.91
CLSTN3-213ENST00000541953 C1orf196B1AJZ1 125 aa9.37□□□□□ -0.91
CLSTN3-213ENST00000541953 TMEM250H0YL14 139 aa9.37□□□□□ -0.91
CLSTN3-213ENST00000541953 TAGLN2P37802 199 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-213ENST00000541953 SPAG11BQ08648 103 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 C10orf25Q5T742 122 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 LINC01551Q86U37 167 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 KRTAP7-1Q8IUC3 87 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 TCTE3Q8IZS6 198 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 TSKUQ8WUA8 353 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 C2orf48Q96LS8 159 aa9.36□□□□□ -0.91
CLSTN3-213ENST00000541953 IGLV7-43P04211 117 aa9.35□□□□□ -0.91
CLSTN3-213ENST00000541953 ALKAL2Q6UX46 152 aa9.35□□□□□ -0.91
CLSTN3-213ENST00000541953 CSDC2Q9Y534 153 aaKnown RBP9.35□□□□□ -0.91
CLSTN3-213ENST00000541953 KRTAP1-4P0C5Y4 121 aa9.34□□□□□ -0.91
CLSTN3-213ENST00000541953 FCER1GP30273 86 aa9.34□□□□□ -0.91
CLSTN3-213ENST00000541953 SUMO2P61956 95 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-213ENST00000541953 RPL39P62891 51 aaKnown RBP9.34□□□□□ -0.91
CLSTN3-213ENST00000541953 BORCS7Q96B45 105 aa9.34□□□□□ -0.91
CLSTN3-213ENST00000541953 VCYO14598 125 aa9.33□□□□□ -0.92
CLSTN3-213ENST00000541953 SMIM7Q9BQ49 75 aa9.33□□□□□ -0.92
CLSTN3-213ENST00000541953 V9GYV3 84 aa9.33□□□□□ -0.92
CLSTN3-213ENST00000541953 MRPL51Q4U2R6 128 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-213ENST00000541953 H0Y9J4 135 aa9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 FAM19A5Q7Z5A7 132 aaPredicted RBP9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 ORAOV1Q8WV07 137 aa9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 FAM210AQ96ND0 272 aa9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 OSTCQ9NRP0 149 aa9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 C6orf48Q9UBA6 75 aa9.31□□□□□ -0.92
CLSTN3-213ENST00000541953 IGHV3OR16-9A0A0B4J2B5 98 aa9.3□□□□□ -0.92
CLSTN3-213ENST00000541953 RNF151Q2KHN1 245 aa9.3□□□□□ -0.92
CLSTN3-213ENST00000541953 UNQ6190/PRO20217Q6UXQ8 127 aa9.3□□□□□ -0.92
CLSTN3-213ENST00000541953 MRPL35Q9NZE8 188 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-213ENST00000541953 A0A087WZ39 114 aa9.29□□□□□ -0.92
CLSTN3-213ENST00000541953 OR10D4PQ8NGN7 298 aa9.29□□□□□ -0.92
CLSTN3-213ENST00000541953 DIRC1Q969H9 104 aa9.29□□□□□ -0.92
CLSTN3-213ENST00000541953 TIMM21Q9BVV7 248 aa9.29□□□□□ -0.92
CLSTN3-213ENST00000541953 ZNF727A8MUV8 499 aa9.28□□□□□ -0.92
CLSTN3-213ENST00000541953 SRP19P09132 144 aaKnown RBP9.28□□□□□ -0.92
CLSTN3-213ENST00000541953 FAM104BQ5XKR9 115 aa9.28□□□□□ -0.92
CLSTN3-213ENST00000541953 KIR2DL4Q99706 377 aa9.28□□□□□ -0.92
CLSTN3-213ENST00000541953 BLOC1S1P78537 153 aa9.27□□□□□ -0.93
CLSTN3-213ENST00000541953 RIGQ13278 110 aa9.27□□□□□ -0.93
CLSTN3-213ENST00000541953 GAGE2EQ4V326 116 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms