RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 LINC00959A0A1B0GUT2 108 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 FAM231BA6NCW3 169 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 ZNF727A8MUV8 499 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 ZNF561-AS1K7EIQ3 104 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 TSHBP01222 138 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 TSKUQ8WUA8 353 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 TMEM191AQ9H0A3 160 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 UBR4Q5T4S7 5183 aa9.31□□□□□ -0.92
VPS28-215ENST00000531924 hCG_2014768A0A024R1R8 64 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 ESDP10768 282 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 FCER1GP30273 86 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 SMAGPQ0VAQ4 97 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 RIGQ13278 110 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 CARD19Q96LW7 228 aa9.3□□□□□ -0.92
VPS28-215ENST00000531924 C7orf77A4D0Y5 90 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 VCYO14598 125 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 GAS8-AS1O95177 125 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 MALP21145 153 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 LINC01551Q86U37 167 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 ZNF664Q8N3J9 261 aa9.29□□□□□ -0.92
VPS28-215ENST00000531924 A0A096LNI7 61 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 TRBV27A0A0K0K1C4 114 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 PPP1R17O96001 155 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 RAB4AP20338 218 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 CD164L2Q6UWJ8 174 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 MRPL52Q86TS9 123 aaKnown RBP9.28□□□□□ -0.92
VPS28-215ENST00000531924 AMN1Q8IY45 258 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 LINC00526Q96FQ7 95 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 OSTCQ9NRP0 149 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 CDC42SE2Q9NRR3 84 aa9.28□□□□□ -0.92
VPS28-215ENST00000531924 MT1HL1P0DM35 61 aa9.27□□□□□ -0.93
VPS28-215ENST00000531924 POLR2KP53803 58 aaKnown RBP9.27□□□□□ -0.93
VPS28-215ENST00000531924 SYCNQ0VAF6 134 aa9.27□□□□□ -0.93
VPS28-215ENST00000531924 ISOC2Q96AB3 205 aa9.27□□□□□ -0.93
VPS28-215ENST00000531924 C1orf196B1AJZ1 125 aa9.26□□□□□ -0.93
VPS28-215ENST00000531924 PRR3P79522 188 aaKnown RBP9.26□□□□□ -0.93
VPS28-215ENST00000531924 KIR2DL4Q99706 377 aa9.26□□□□□ -0.93
VPS28-215ENST00000531924 SMKR1H3BMG3 65 aa9.25□□□□□ -0.93
VPS28-215ENST00000531924 COX7A2LO14548 114 aa9.25□□□□□ -0.93
VPS28-215ENST00000531924 SRP19P09132 144 aaKnown RBP9.24□□□□□ -0.93
VPS28-215ENST00000531924 CAMPP49913 170 aa9.24□□□□□ -0.93
VPS28-215ENST00000531924 SUMO2P61956 95 aaKnown RBP9.24□□□□□ -0.93
VPS28-215ENST00000531924 TMEM241Q24JQ0 296 aa9.24□□□□□ -0.93
VPS28-215ENST00000531924 NUP35Q8NFH5 326 aa9.24□□□□□ -0.93
VPS28-215ENST00000531924 TMEM18Q96B42 140 aa9.24□□□□□ -0.93
VPS28-215ENST00000531924 NAT8BQ9UHF3 227 aa9.24□□□□□ -0.93
VPS28-215ENST00000531924 PPP1R2P9O14990 202 aa9.23□□□□□ -0.93
VPS28-215ENST00000531924 GAGE2BQ13066 116 aa9.23□□□□□ -0.93
VPS28-215ENST00000531924 FAM74A3Q4VXF1 159 aa9.23□□□□□ -0.93
VPS28-215ENST00000531924 V9GYV3 84 aa9.23□□□□□ -0.93
VPS28-215ENST00000531924 IGLV4-69A0A075B6H9 119 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 TRAV13-1A0A0B4J241 112 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 LOC107984640A0A0U1RRK4 108 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 ADIRFQ15847 76 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 REG3GQ6UW15 175 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 CAMK2N2Q96S95 79 aa9.22□□□□□ -0.93
VPS28-215ENST00000531924 CSDC2Q9Y534 153 aaKnown RBP9.22□□□□□ -0.93
VPS28-215ENST00000531924 APOMO95445 188 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 RNASE13Q5GAN3 156 aaKnown RBP9.21□□□□□ -0.94
VPS28-215ENST00000531924 SPINK6Q6UWN8 80 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 Q6ZRP5 223 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 NRACQ8N912 160 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 LINC01600Q96MT4 127 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 UBE2D4Q9Y2X8 147 aa9.21□□□□□ -0.94
VPS28-215ENST00000531924 TCAPO15273 167 aa9.2□□□□□ -0.94
VPS28-215ENST00000531924 CKS2P33552 79 aa9.2□□□□□ -0.94
VPS28-215ENST00000531924 PTTG1IPP53801 180 aa9.2□□□□□ -0.94
VPS28-215ENST00000531924 A0A1B0GW15 77 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 LINC00862A6NCI5 91 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 RPL23P62829 140 aaKnown RBP9.19□□□□□ -0.94
VPS28-215ENST00000531924 MRPL51Q4U2R6 128 aaKnown RBP9.19□□□□□ -0.94
VPS28-215ENST00000531924 FAM104BQ5XKR9 115 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 C5orf38Q86SI9 138 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 C20orf78Q9BR46 151 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 NAT8Q9UHE5 227 aa9.19□□□□□ -0.94
VPS28-215ENST00000531924 S100A8P05109 93 aa9.18□□□□□ -0.94
VPS28-215ENST00000531924 TIMM21Q9BVV7 248 aa9.18□□□□□ -0.94
VPS28-215ENST00000531924 F8W036 122 aa9.17□□□□□ -0.94
VPS28-215ENST00000531924 RPL18AQ02543 176 aaKnown RBP9.17□□□□□ -0.94
VPS28-215ENST00000531924 PEA15Q15121 130 aa9.17□□□□□ -0.94
VPS28-215ENST00000531924 Q6ZUT4 128 aa9.17□□□□□ -0.94
VPS28-215ENST00000531924 C2orf48Q96LS8 159 aa9.17□□□□□ -0.94
VPS28-215ENST00000531924 A0A0J9YXV3 536 aa9.16□□□□□ -0.94
VPS28-215ENST00000531924 SMIM27A0A1W2PRY6 76 aa9.16□□□□□ -0.94
VPS28-215ENST00000531924 SPAG11BQ08648 103 aa9.16□□□□□ -0.94
VPS28-215ENST00000531924 TNFRSF6BO95407 300 aa9.15□□□□□ -0.94
VPS28-215ENST00000531924 MT-ND6P03923 174 aa9.15□□□□□ -0.94
VPS28-215ENST00000531924 TRBV24-1A0A075B6N3 115 aa9.14□□□□□ -0.95
VPS28-215ENST00000531924 RPL32P62910 135 aaKnown RBP9.14□□□□□ -0.95
VPS28-215ENST00000531924 MRPL54Q6P161 138 aaKnown RBP9.14□□□□□ -0.95
VPS28-215ENST00000531924 OR10D4PQ8NGN7 298 aa9.14□□□□□ -0.95
VPS28-215ENST00000531924 OPRPNQ99935 248 aaPredicted RBP9.14□□□□□ -0.95
VPS28-215ENST00000531924 SPANXA1Q9NS26 97 aa9.14□□□□□ -0.95
VPS28-215ENST00000531924 A0A1W2PNN7 141 aa9.13□□□□□ -0.95
VPS28-215ENST00000531924 D6R8Y8 96 aa9.13□□□□□ -0.95
VPS28-215ENST00000531924 RPL39P62891 51 aaKnown RBP9.13□□□□□ -0.95
VPS28-215ENST00000531924 HBBP68871 147 aa9.13□□□□□ -0.95
VPS28-215ENST00000531924 C9orf116Q5BN46 136 aaPredicted RBP9.13□□□□□ -0.95
VPS28-215ENST00000531924 ORAOV1Q8WV07 137 aa9.13□□□□□ -0.95
VPS28-215ENST00000531924 SMIM2Q9BVW6 85 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms