RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A8MZ25 164 aa14.57□□□□□ -0.08
VPS28-209ENST00000528142 TMEM170BQ5T4T1 132 aa14.57□□□□□ -0.08
VPS28-209ENST00000528142 Q6ZUT4 128 aa14.57□□□□□ -0.08
VPS28-209ENST00000528142 RNASE13Q5GAN3 156 aaKnown RBP14.57□□□□□ -0.08
VPS28-209ENST00000528142 HERVK_113P61574 105 aa14.56□□□□□ -0.08
VPS28-209ENST00000528142 ZNF22P17026 224 aaPredicted RBP14.55□□□□□ -0.08
VPS28-209ENST00000528142 HSD52Q0P140 79 aa14.55□□□□□ -0.08
VPS28-209ENST00000528142 CSDC2Q9Y534 153 aaKnown RBP14.55□□□□□ -0.08
VPS28-209ENST00000528142 MYMXA0A1B0GTQ4 84 aa14.55□□□□□ -0.08
VPS28-209ENST00000528142 TMEM223A0PJW6 202 aa14.53□□□□□ -0.08
VPS28-209ENST00000528142 DGAT2L7PQ6IED9 249 aa14.52□□□□□ -0.08
VPS28-209ENST00000528142 TMEM243Q9BU79 118 aa14.52□□□□□ -0.08
VPS28-209ENST00000528142 PRO0255Q9UI72 69 aa14.52□□□□□ -0.08
VPS28-209ENST00000528142 G3V4G9 280 aa14.52□□□□□ -0.09
VPS28-209ENST00000528142 CELA1Q9UNI1 258 aa14.52□□□□□ -0.09
VPS28-209ENST00000528142 TINCRA0A1B0GVN0 87 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 H7C423 109 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 GYPEP15421 78 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 UBE2D1P51668 147 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 DNAH3Q8TD57 4116 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 TRBV6-8A0A0A6YYG3 113 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 TSPEAR-AS2P59090 65 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 DAD1P61803 113 aa14.5□□□□□ -0.09
VPS28-209ENST00000528142 SPART-AS1P0CW21 52 aa14.49□□□□□ -0.09
VPS28-209ENST00000528142 SMAGPQ0VAQ4 97 aa14.49□□□□□ -0.09
VPS28-209ENST00000528142 ORAOV1Q8WV07 137 aa14.49□□□□□ -0.09
VPS28-209ENST00000528142 ZNF815PA8K554 130 aa14.48□□□□□ -0.09
VPS28-209ENST00000528142 ZNF25P17030 456 aaPredicted RBP14.48□□□□□ -0.09
VPS28-209ENST00000528142 SEC11AP67812 179 aa14.48□□□□□ -0.09
VPS28-209ENST00000528142 CDC42SE2Q9NRR3 84 aa14.48□□□□□ -0.09
VPS28-209ENST00000528142 UBE2L6O14933 153 aa14.47□□□□□ -0.09
VPS28-209ENST00000528142 LEPROTO15243 131 aa14.47□□□□□ -0.09
VPS28-209ENST00000528142 SAMD5Q5TGI4 173 aa14.47□□□□□ -0.09
VPS28-209ENST00000528142 OR5A1Q8NGJ0 315 aa14.47□□□□□ -0.09
VPS28-209ENST00000528142 ATP6V0E2Q8NHE4 81 aa14.47□□□□□ -0.09
VPS28-209ENST00000528142 J3QQQ9 107 aa14.46□□□□□ -0.09
VPS28-209ENST00000528142 PAX4O43316 350 aa14.46□□□□□ -0.09
VPS28-209ENST00000528142 TIRAPP58753 221 aa14.46□□□□□ -0.09
VPS28-209ENST00000528142 VSIG2Q96IQ7 327 aa14.46□□□□□ -0.09
VPS28-209ENST00000528142 AMMECR1LQ6DCA0 310 aa14.45□□□□□ -0.1
VPS28-209ENST00000528142 FAM19A3Q7Z5A8 133 aa14.45□□□□□ -0.1
VPS28-209ENST00000528142 ATP5G1P05496 136 aa14.45□□□□□ -0.1
VPS28-209ENST00000528142 TAL2Q16559 108 aa14.45□□□□□ -0.1
VPS28-209ENST00000528142 PLEKHB2Q96CS7 222 aa14.45□□□□□ -0.1
VPS28-209ENST00000528142 NBEAL2Q6ZNJ1 2754 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 IGLV5-45A0A087WSX0 123 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 TAX1BP3O14907 124 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 Q6ZVH6 145 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 RETNQ9HD89 108 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 NOTCH1P46531 2555 aa14.44□□□□□ -0.1
VPS28-209ENST00000528142 TMEM101Q96IK0 257 aa14.43□□□□□ -0.1
VPS28-209ENST00000528142 TM2D2Q9BX73 214 aa14.43□□□□□ -0.1
VPS28-209ENST00000528142 IGHV3-64A0A075B6Q5 118 aa14.43□□□□□ -0.1
VPS28-209ENST00000528142 LGALS3P17931 250 aaKnown RBP14.43□□□□□ -0.1
VPS28-209ENST00000528142 GAGE6Q13070 117 aa14.43□□□□□ -0.1
VPS28-209ENST00000528142 LINC00242Q5T6M2 205 aa14.43□□□□□ -0.1
VPS28-209ENST00000528142 GEMIN7Q9H840 131 aaKnown RBP14.43□□□□□ -0.1
VPS28-209ENST00000528142 GCSHP23434 173 aa14.42□□□□□ -0.1
VPS28-209ENST00000528142 CEND1Q8N111 149 aa14.42□□□□□ -0.1
VPS28-209ENST00000528142 COX11Q9Y6N1 276 aa14.42□□□□□ -0.1
VPS28-209ENST00000528142 NBEAL1Q6ZS30 2694 aa14.42□□□□□ -0.1
VPS28-209ENST00000528142 A0A0J9YY99 117 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 FXYD2P54710 66 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 COX6A2Q02221 97 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 LINC00469Q8N7U9 141 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 CHCHD5Q9BSY4 110 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 IGHV1-58A0A0C4DH39 117 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 TEX48A0A1B0GUV7 120 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 A6NDN8 102 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 IGHV3-30-3P0DP02 117 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 SCGB1D4Q6XE38 83 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 CDKN2A-AS1Q9UH64 79 aa14.41□□□□□ -0.1
VPS28-209ENST00000528142 TRAV8-3A0A0A6YYJ7 113 aa14.4□□□□□ -0.1
VPS28-209ENST00000528142 K7EP13 123 aa14.4□□□□□ -0.1
VPS28-209ENST00000528142 MGAM2Q2M2H8 2515 aa14.4□□□□□ -0.1
VPS28-209ENST00000528142 F5H768 121 aa14.39□□□□□ -0.11
VPS28-209ENST00000528142 HERVK_113P63121 156 aa14.39□□□□□ -0.11
VPS28-209ENST00000528142 HIST1H4GQ99525 98 aa14.39□□□□□ -0.11
VPS28-209ENST00000528142 IGLV4-60A0A075B6I1 120 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 TRAV26-1A0A087WT03 109 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 TRAV13-1A0A0B4J241 112 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 A0A096LPF7 62 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 SPINK8P0C7L1 97 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 C12orf74Q32Q52 190 aa14.38□□□□□ -0.11
VPS28-209ENST00000528142 PRB2P02812 416 aaPredicted RBP14.37□□□□□ -0.11
VPS28-209ENST00000528142 H3BRM9 83 aa14.36□□□□□ -0.11
VPS28-209ENST00000528142 HTN3P15516 51 aa14.35□□□□□ -0.11
VPS28-209ENST00000528142 C11orf68Q9H3H3 251 aaKnown RBP14.35□□□□□ -0.11
VPS28-209ENST00000528142 SPANXB1Q9NS25 103 aaPredicted RBP14.34□□□□□ -0.11
VPS28-209ENST00000528142 PTTG1IPP53801 180 aa14.34□□□□□ -0.11
VPS28-209ENST00000528142 C10orf126Q8N4M7 172 aa14.34□□□□□ -0.11
VPS28-209ENST00000528142 DNHD1Q96M86 4753 aa14.33□□□□□ -0.12
VPS28-209ENST00000528142 A0A1B0GUV1 79 aa14.33□□□□□ -0.12
VPS28-209ENST00000528142 IGLV5-39A0A0G2JS06 123 aa14.32□□□□□ -0.12
VPS28-209ENST00000528142 MRPL23Q16540 153 aaKnown RBP14.32□□□□□ -0.12
VPS28-209ENST00000528142 KPRPQ5T749 579 aaPredicted RBP14.32□□□□□ -0.12
VPS28-209ENST00000528142 SRSF9Q13242 221 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS28-209ENST00000528142 SMIM13P0DJ93 91 aa14.31□□□□□ -0.12
VPS28-209ENST00000528142 RBX1P62877 108 aa14.31□□□□□ -0.12
VPS28-209ENST00000528142 ZFAND6Q6FIF0 208 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms