RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CDC42SE2Q9NRR3 84 aa6.81□□□□□ -1.32
CD44-227ENST00000528086 FAM229AH3BQW9 127 aa6.8□□□□□ -1.32
CD44-227ENST00000528086 SUMO2P61956 95 aaKnown RBP6.8□□□□□ -1.32
CD44-227ENST00000528086 MRPL54Q6P161 138 aaKnown RBP6.8□□□□□ -1.32
CD44-227ENST00000528086 RNASEKQ6P5S7 137 aaKnown RBP6.8□□□□□ -1.32
CD44-227ENST00000528086 TRBV24-1A0A075B6N3 115 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 LINC00959A0A1B0GUT2 108 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 hDV102S1A0JD36 115 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 NPYP01303 97 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 CHTF8P0CG12 524 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 ADCYAP1P18509 176 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 HNRNPA3P51991 378 aaKnown RBP6.79□□□□□ -1.32
CD44-227ENST00000528086 CLRN3Q8NCR9 226 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 OR5A1Q8NGJ0 315 aa6.79□□□□□ -1.32
CD44-227ENST00000528086 GVQW2A0A096LPI5 108 aaPredicted RBP6.78□□□□□ -1.32
CD44-227ENST00000528086 C7orf77A4D0Y5 90 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 VCYO14598 125 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 ZNF25P17030 456 aaPredicted RBP6.78□□□□□ -1.32
CD44-227ENST00000528086 RPL32P62910 135 aaKnown RBP6.78□□□□□ -1.32
CD44-227ENST00000528086 HIGD2BQ4VC39 106 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 RNASE13Q5GAN3 156 aaKnown RBP6.78□□□□□ -1.32
CD44-227ENST00000528086 AMMECR1LQ6DCA0 310 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 LINC00526Q96FQ7 95 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 UBE2D4Q9Y2X8 147 aa6.78□□□□□ -1.32
CD44-227ENST00000528086 D6R8Y8 96 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 CCL25O15444 150 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 TNFRSF6BO95407 300 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 RPL39P62891 51 aaKnown RBP6.77□□□□□ -1.33
CD44-227ENST00000528086 HBBP68871 147 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 CLLU1Q5K131 121 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 ZNF664Q8N3J9 261 aa6.77□□□□□ -1.33
CD44-227ENST00000528086 A0A1B0GW15 77 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 LINC00862A6NCI5 91 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 XCL1P47992 114 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 Q6ZUT4 128 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 PRSS3P2Q8NHM4 247 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 OPRPNQ99935 248 aaPredicted RBP6.76□□□□□ -1.33
CD44-227ENST00000528086 C20orf78Q9BR46 151 aa6.76□□□□□ -1.33
CD44-227ENST00000528086 CSDC2Q9Y534 153 aaKnown RBP6.76□□□□□ -1.33
CD44-227ENST00000528086 CKS2P33552 79 aa6.75□□□□□ -1.33
CD44-227ENST00000528086 SPACA4Q8TDM5 124 aa6.75□□□□□ -1.33
CD44-227ENST00000528086 SMIM2Q9BVW6 85 aa6.75□□□□□ -1.33
CD44-227ENST00000528086 TCAPO15273 167 aa6.74□□□□□ -1.33
CD44-227ENST00000528086 COX6A2Q02221 97 aa6.74□□□□□ -1.33
CD44-227ENST00000528086 TIMM21Q9BVV7 248 aa6.74□□□□□ -1.33
CD44-227ENST00000528086 IGHV3-64A0A075B6Q5 118 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 A0A087WYN8 130 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 PPP1R2P9O14990 202 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 PPP1R17O96001 155 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 PLA2G1BP04054 148 aaKnown RBP6.73□□□□□ -1.33
CD44-227ENST00000528086 CD164L2Q6UWJ8 174 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 ATP5L2Q7Z4Y8 100 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 TMEM101Q96IK0 257 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 BTF3L4Q96K17 158 aa6.73□□□□□ -1.33
CD44-227ENST00000528086 TNXBP22105 4242 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 PRSS47A8MTI9 375 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 KRTAP29-1A8MX34 341 aaPredicted RBP6.72□□□□□ -1.33
CD44-227ENST00000528086 PHOX2AO14813 284 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 FCER1GP30273 86 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 PNRC1Q12796 327 aaPredicted RBP6.72□□□□□ -1.33
CD44-227ENST00000528086 KIR2DL4Q99706 377 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 PLAC8Q9NZF1 115 aa6.72□□□□□ -1.33
CD44-227ENST00000528086 A0A096LNI7 61 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 TRAV13-1A0A0B4J241 112 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 IGHV1-58A0A0C4DH39 117 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 TMEM218A2RU14 115 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 RAB14P61106 215 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 CFAP161Q6P656 301 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 TMEM136Q6ZRR5 245 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 ANAPC16Q96DE5 110 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 PRELID3AQ96N28 172 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
CD44-227ENST00000528086 F8W036 122 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 PPBPP02775 128 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 MT-ND4LP03901 98 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 SS18Q15532 418 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 C5orf38Q86SI9 138 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 ORMDL3Q8N138 153 aa6.7□□□□□ -1.34
CD44-227ENST00000528086 IGLV4-69A0A075B6H9 119 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.69□□□□□ -1.34
CD44-227ENST00000528086 IGHV3OR16-9A0A0B4J2B5 98 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 C1orf196B1AJZ1 125 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 S100A8P05109 93 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 RPL37AP61513 92 aaKnown RBP6.69□□□□□ -1.34
CD44-227ENST00000528086 MRPS36P82909 103 aaKnown RBP6.69□□□□□ -1.34
CD44-227ENST00000528086 ZC2HC1BQ5TFG8 222 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 Q6ZRU5 148 aa6.69□□□□□ -1.34
CD44-227ENST00000528086 IGLV4-3A0A075B6K6 122 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 IGKV2-24A0A0C4DH68 120 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 LOC389332A0A1B0GUA5 103 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 C10orf91Q5T1B1 145 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 LINC00173Q6ZV60 143 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 SPANXA1Q9NS26 97 aa6.68□□□□□ -1.34
CD44-227ENST00000528086 COX7A2LO14548 114 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 MT1HL1P0DM35 61 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 SYCNQ0VAF6 134 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 MAJINQ3KP22 176 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 UQCC3Q6UW78 93 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 CARD19Q96LW7 228 aa6.67□□□□□ -1.34
CD44-227ENST00000528086 HMCN2Q8NDA2 5059 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms