RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CITED2Q99967 270 aaPredicted RBP15.26■□□□□ 0.03
VPS28-205ENST00000526204 TEN1Q86WV5 123 aa15.25■□□□□ 0.03
VPS28-205ENST00000526204 HELZ2Q9BYK8 2649 aaKnown RBP15.25■□□□□ 0.03
VPS28-205ENST00000526204 DAZ2Q13117 558 aaKnown RBP15.25■□□□□ 0.03
VPS28-205ENST00000526204 MIAQ16674 131 aa15.25■□□□□ 0.03
VPS28-205ENST00000526204 DAZ4Q86SG3 579 aaKnown RBP15.25■□□□□ 0.03
VPS28-205ENST00000526204 DAZ3Q9NR90 486 aaKnown RBP15.25■□□□□ 0.03
VPS28-205ENST00000526204 TRAV4A0A0B4J268 109 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 K7EQD1 137 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 TIMM17BO60830 172 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 SCGB1A1P11684 91 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 RNF183Q96D59 192 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 C16orf95Q9H693 158 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 CDKN2A-AS1Q9UH64 79 aa15.24■□□□□ 0.03
VPS28-205ENST00000526204 PLA2G2AP14555 144 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 PPDPFLQ8WWR9 84 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 GTSF1LQ9H1H1 148 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 YAE1D1Q9NRH1 226 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 CSDC2Q9Y534 153 aaKnown RBP15.23■□□□□ 0.03
VPS28-205ENST00000526204 HERVK_113P63121 156 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 Q1RN00 199 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 ADAMTSL4-AS1Q5T5F5 129 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 HIST2H2BCQ6DN03 193 aa15.23■□□□□ 0.03
VPS28-205ENST00000526204 M0QXV9 152 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 SMAGPQ0VAQ4 97 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 Q6ZTI0 123 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 LINC01006Q8NI28 216 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 FAM110AQ9BQ89 295 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 H7C2G1 150 aa15.22■□□□□ 0.03
VPS28-205ENST00000526204 RNASE1P07998 156 aaKnown RBP15.22■□□□□ 0.03
VPS28-205ENST00000526204 TRBV30A0A0K0K1B3 111 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 A8MZ25 164 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 IFITM1P13164 125 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 FAM19A3Q7Z5A8 133 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 J3QKU1 62 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 NDUFA1O15239 70 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 TMEM101Q96IK0 257 aa15.2■□□□□ 0.02
VPS28-205ENST00000526204 ATXN8Q156A1 80 aa15.19■□□□□ 0.02
VPS28-205ENST00000526204 ITPR3Q14573 2671 aa15.18■□□□□ 0.02
VPS28-205ENST00000526204 SLC25A20O43772 301 aa15.18■□□□□ 0.02
VPS28-205ENST00000526204 LINC00242Q5T6M2 205 aa15.18■□□□□ 0.02
VPS28-205ENST00000526204 C16orf74Q96GX8 76 aa15.18■□□□□ 0.02
VPS28-205ENST00000526204 NOP10Q9NPE3 64 aaKnown RBP15.18■□□□□ 0.02
VPS28-205ENST00000526204 IGLV5-39A0A0G2JS06 123 aa15.17■□□□□ 0.02
VPS28-205ENST00000526204 CIRBPQ14011 172 aaKnown RBP15.17■□□□□ 0.02
VPS28-205ENST00000526204 CIDEAO60543 219 aa15.17■□□□□ 0.02
VPS28-205ENST00000526204 GIG44P09565 113 aaPredicted RBP15.17■□□□□ 0.02
VPS28-205ENST00000526204 LINC00694P0DN24 101 aa15.17■□□□□ 0.02
VPS28-205ENST00000526204 KRTAP1-1Q07627 177 aa15.17■□□□□ 0.02
VPS28-205ENST00000526204 NTM-AS1Q6ZSK4 140 aa15.17■□□□□ 0.02
VPS28-205ENST00000526204 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.17■□□□□ 0.02
VPS28-205ENST00000526204 C9JAW5 83 aa15.16■□□□□ 0.02
VPS28-205ENST00000526204 IGLV1-51P01701 117 aa15.16■□□□□ 0.02
VPS28-205ENST00000526204 COX6A2Q02221 97 aa15.16■□□□□ 0.02
VPS28-205ENST00000526204 CARD19Q96LW7 228 aa15.16■□□□□ 0.02
VPS28-205ENST00000526204 TLN2Q9Y4G6 2542 aa15.16■□□□□ 0.02
VPS28-205ENST00000526204 ANKRD29Q8N6D5 301 aa15.15■□□□□ 0.02
VPS28-205ENST00000526204 GAGE12JA6NER3 117 aa15.14■□□□□ 0.01
VPS28-205ENST00000526204 TRIAP1O43715 76 aa15.14■□□□□ 0.01
VPS28-205ENST00000526204 GAGE4Q13068 117 aa15.14■□□□□ 0.01
VPS28-205ENST00000526204 GAGE5Q13069 117 aa15.14■□□□□ 0.01
VPS28-205ENST00000526204 CCDC168Q8NDH2 2452 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 COX6CP09669 75 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 CDC42SE2Q9NRR3 84 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 ICOSQ9Y6W8 199 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 LINC01620Q4KN68 170 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 C19orf73Q9NVV2 129 aa15.13■□□□□ 0.01
VPS28-205ENST00000526204 TRGV2A0A075B6R0 118 aa15.12■□□□□ 0.01
VPS28-205ENST00000526204 PLAC8L1A1L4L8 177 aa15.12■□□□□ 0.01
VPS28-205ENST00000526204 LINC01600Q96MT4 127 aa15.12■□□□□ 0.01
VPS28-205ENST00000526204 SONP18583 2426 aaKnown RBP15.12■□□□□ 0.01
VPS28-205ENST00000526204 ITPR2Q14571 2701 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 TRAV13-1A0A0B4J241 112 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 OVOL2Q9BRP0 275 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 TRBV6-4A0A1B0GX49 114 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 NPC2P61916 151 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 COPS9Q8WXC6 57 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 TMEM243Q9BU79 118 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 CDIP1Q9H305 208 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 Q9H8V8 135 aa15.11■□□□□ 0.01
VPS28-205ENST00000526204 SMIM1B2RUZ4 78 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 H7C423 109 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 UBE2L6O14933 153 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 RPL35AP18077 110 aaKnown RBP15.1■□□□□ 0.01
VPS28-205ENST00000526204 PDZD2O15018 2839 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 AKAP9Q99996 3911 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 GAGE7O76087 117 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 GAGE12FP0CL80 117 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 GAGE12GP0CL81 117 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 GAGE12IP0CL82 117 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 CSNK1G2-AS1Q8NCQ2 148 aa15.1■□□□□ 0.01
VPS28-205ENST00000526204 GCN1Q92616 2671 aaKnown RBP15.09■□□□□ 0.01
VPS28-205ENST00000526204 WFDC10AQ9H1F0 79 aa15.09■□□□□ 0.01
VPS28-205ENST00000526204 NDUFA7O95182 113 aa15.08■□□□□ 0.01
VPS28-205ENST00000526204 TRBV10-2A0A0K0K1G8 114 aa15.08■□□□□ 0
VPS28-205ENST00000526204 TMEM262E9PQX1 116 aa15.07■□□□□ 0
VPS28-205ENST00000526204 HILS1P60008 231 aa15.07■□□□□ 0
VPS28-205ENST00000526204 DAND5Q8N907 189 aa15.07■□□□□ 0
VPS28-205ENST00000526204 LINC00308Q8TCZ7 52 aa15.07■□□□□ 0
VPS28-205ENST00000526204 FLNAP21333 2647 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms